Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2002 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAATTGCTTCTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATTGGGAGAATCGTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1242 45.81 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33257866 33259862 - CaPI482276_01g020020.1 Cam01g2002 119084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2002 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cam01g2002 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cam01g2002 413 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Cam01g2002 413 MobiDBLite consensus disorder prediction 22 46 - -
Cam01g2002 413 Pfam F-box domain 55 97 IPR001810 GO:0005515(InterPro)
Cam01g2002 413 Pfam Tub family 116 408 IPR000007 -
Cam01g2002 413 Gene3D - 48 101 - -
Cam01g2002 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cam01g2002 413 PANTHER TUBBY-RELATED 46 412 - -
Cam01g2002 413 Gene3D Tubby Protein; Chain A 114 413 IPR025659 -
Cam01g2002 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Cam01g2002 413 MobiDBLite consensus disorder prediction 278 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2002 K19600 - - csv:101221704 787.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2002 Cam-Chr1:33257866 Cam05g1157 Cam-Chr5:10798164 2.50E-118 dispersed
Cam01g2002 Cam-Chr1:33257866 Cam05g2064 Cam-Chr5:29312176 9.00E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0782 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 6.8e-178 620.5
Cam05g1157 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Cam08g1140 . 1 432 TUB Transcription Factor Family AT1G76900 68.6 1.7e-168 589.3
Cam05g0673 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 3.2e-111 399.1
Cam05g1157 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Cam08g0782 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.7e-94 341.3
Cam08g1140 . 175 432 TUB Transcription Factor Family AT1G25280 70.0 1.5e-92 336.3
Cam05g0673 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 4.7e-70 261.5
Cam05g2064 . 315 542 TUB Transcription Factor Family AT1G25280 53.8 1.4e-66 250.0
Cam01g2002 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 8.6e-64 240.7
Cam06g0544 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.4e-53 206.1
Cam05g0673 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 1.5e-96 349.7
Cam06g0544 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.4e-86 316.6
Cam08g0782 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.7e-84 308.5
Cam08g1140 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.9e-83 306.2
Cam05g1157 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Cam05g2064 . 251 542 TUB Transcription Factor Family AT5G18680 51.9 3.4e-77 285.4
Cam07g1053 . 117 383 TUB Transcription Factor Family AT5G18680 50.3 4.2e-67 251.9
Cam01g2002 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 9.2e-139 490.3
Cam05g2064 . 137 542 TUB Transcription Factor Family AT2G18280 59.0 4.4e-125 444.9
Cam05g1157 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 3.6e-119 425.2
Cam08g0782 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.2e-116 416.0
Cam05g0673 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 3.8e-116 415.2
Cam08g1140 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Cam06g0544 . 1 362 TUB Transcription Factor Family AT2G18280 51.6 2.9e-100 362.5
Cam05g0673 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 6.8e-161 563.9
Cam06g0544 . 1 383 TUB Transcription Factor Family AT2G47900 64.5 5.6e-147 517.7
Cam08g0782 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.0e-132 470.3
Cam08g1140 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 2.5e-131 465.7
Cam05g1157 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.5e-131 463.8
Cam05g2064 . 146 542 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Cam01g2002 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 4.8e-114 408.3
Cam07g1053 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 8.7e-100 360.9
Cam09g0341 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 2.9e-73 272.3
Cam08g0782 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Cam05g1157 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.1e-146 516.5
Cam08g1140 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 4.1e-141 498.0
Cam05g0673 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 3.6e-105 378.6
Cam05g2064 . 204 542 TUB Transcription Factor Family AT1G43640 50.1 2.3e-99 359.4
Cam06g0544 . 49 362 TUB Transcription Factor Family AT1G43640 50.4 5.4e-93 338.2
Cam05g2064 . 170 542 TUB Transcription Factor Family AT1G47270 64.4 1.0e-134 476.9
Cam01g2002 . 33 413 TUB Transcription Factor Family AT1G47270 57.0 1.0e-121 433.7
Cam05g1157 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Cam08g0782 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 1.9e-112 402.9
Cam08g1140 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 4.2e-112 401.7
Cam05g0673 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.5e-104 375.9
Cam07g1053 . 50 383 TUB Transcription Factor Family AT1G53320 77.7 4.8e-153 537.7
Cam05g0673 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 3.7e-97 351.7
Cam05g1157 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.4e-82 301.6
Cam06g0544 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.4e-82 301.6
Cam08g1140 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 4.9e-81 298.1
Cam08g0782 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.2e-80 295.0
Cam05g2064 . 255 542 TUB Transcription Factor Family AT3G06380 52.9 3.5e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51334 PF01167 Tub 1.30E-101 CL0395 Cam TF