Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2002 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAATTGCTTCTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATTGGGAGAATCGTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1242 45.81 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33257866 33259862 - CaPI482276_01g020020.1 Cam01g2002 119084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2002 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cam01g2002 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cam01g2002 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cam01g2002 413 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Cam01g2002 413 MobiDBLite consensus disorder prediction 22 46 - -
Cam01g2002 413 Pfam F-box domain 55 97 IPR001810 GO:0005515(InterPro)
Cam01g2002 413 Pfam Tub family 116 408 IPR000007 -
Cam01g2002 413 Gene3D - 48 101 - -
Cam01g2002 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cam01g2002 413 PANTHER TUBBY-RELATED 46 412 - -
Cam01g2002 413 Gene3D Tubby Protein; Chain A 114 413 IPR025659 -
Cam01g2002 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Cam01g2002 413 MobiDBLite consensus disorder prediction 278 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2002 Cam-Chr1:33257866 Cam05g1157 Cam-Chr5:10798164 2.50E-118 dispersed
Cam01g2002 Cam-Chr1:33257866 Cam05g2064 Cam-Chr5:29312176 9.00E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51334 PF01167 Tub 1.30E-101 CL0395 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2002 K19600 - csv:101221704 787.719