Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2004 ATGAAGAAGAAAAAAATGGAAAAACCTCCAACGCAGCTTTCCGGGGAAAAAATTCCTCTCGGACTCCGGCGAAACGTTCAGAAACTGGCTTTCGTTTTGGCCGGAAAATTTGGAGAAGCACTACCAAATCTTCTCAAAGTGGTCACCGGAAGCGCCGCCATGGAAGCTCCAGTTAGGGCATTTCGCCCCTGCGTTCTTAATCGCCGCCTCTTCTCCAAAGCAATTCCTCCATCCCACCTCGTTTCATCTCCCGAATCTAATCGGAGCGCGATTTTCCGGCAATCTTCAACCTATTTCCATTCTCCTCCTTCTAGAAAGTACCTCGGTTCCAAAATCTCACTCTCACTCACTCTTTCACATTGCTCCTCCTCATCCTTTGGATCTTCTTCATATTCTCTTGGTTCCTGCCCTTCTAATTTTCTTTCTTCTTTACCCTCATTACAATCCTTCGGCTCTCAATTCGCGTCTGATTACTCCAATTCATTTCTATCCGATTCGAACGGCAGTGCCTGGACTTGGAATCGCGCTTCGGAGAGTGCAATTGGAAACAACGTGGGGATTTTGGGCGGCGAAAAGGGAGCGGCGACTGTGGTTTTGTTAGGTTGGCTTGGGGCAAAAACTAAGCATCTGAGGAGGTACGTGGAATGGTACAATGCGAGGGGCATCAACGCTTTGACGTTTGTGGTGGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAAAGTTGAGCAGCGGATTTCGGATTTGGCGGTTGAACTCATCTCTTGGTTATCAGAGGGGGAAGAGAATGATAAAGATCGACGCCTGATTTTTCATACTTTTAGCAACACGGGCTGGTTTGTATACGGAGCCATTCTTGAAATTTTGCAGGGGCGGAAAGATCTGTTGGAGAAGATTAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCTTCTGCATCTCCAACGGTCAACGGAGAGGAAATAGACAAGAAACCTCTTCTGCTGGAAACCCTTGTCCTATCATCATTGGAGAAGTTCTTCTCGGTTGCTTTGAAGTTGCCAGACGTCGACAAGAGATTGAACAACATTGTTTCCGTTCTTACAGAGAACCAACCTTTGTATCCTGAGCTTTATCTGTACAGTTCAGGAGATAAAGTTGTACCTTCCGAGTCAATCGAGCTACTTATTGAGAAGAGAAAGAAGACAGGAAGGAAGGTTTTGTCTCACAACTTCGGCTCGTCCCCGCACGTTGCTGTGGATTGTGAATGTGCATATGGCAGATCATTTTTGCTGAACTGTAAAATTTTGGATCCAGATGAGGGAGCGTTTGGATTGGCAATGTCGTCGTCGGTCGACGTTATATCTCCAGCCTGCACGTCTAATAACAAACTCAGATCGGCGAAGATGAACGATTTAATGACGAAATCATTCTTAAGTTATGTGGAATTAAAGAAACAGGCACAGAGGGATGCCGCAGGCGGCGGCGGCGACGGCTTCGACATTGAATCCGGCCGCCAAGAACTCAATCCGATGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATTTCCGTCGCGTTCGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACGAGCGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAGAGATTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCGAGACCGAGTTAGGGGACCGAGTCAGGCACGAATCAGTGATGGATATACAGAGGAGTTTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGA 2367 45.92 MKKKKMEKPPTQLSGEKIPLGLRRNVQKLAFVLAGKFGEALPNLLKVVTGSAAMEAPVRAFRPCVLNRRLFSKAIPPSHLVSSPESNRSAIFRQSSTYFHSPPSRKYLGSKISLSLTLSHCSSSSFGSSSYSLGSCPSNFLSSLPSLQSFGSQFASDYSNSFLSDSNGSAWTWNRASESAIGNNVGILGGEKGAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRKVEQRISDLAVELISWLSEGEENDKDRRLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSASPTVNGEEIDKKPLLLETLVLSSLEKFFSVALKLPDVDKRLNNIVSVLTENQPLYPELYLYSSGDKVVPSESIELLIEKRKKTGRKVLSHNFGSSPHVAVDCECAYGRSFLLNCKILDPDEGAFGLAMSSSVDVISPACTSNNKLRSAKMNDLMTKSFLSYVELKKQAQRDAAGGGGDGFDIESGRQELNPMEEQNLSLFFEQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAFGEGTAVDRTRTSVTSGLRVKLREMMNEFQRLREKVVADHKEDLRRRYFGANGEQPSDEQVEKIMSGSLKLETFEGKLSETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSMLVC 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33268374 33275102 - CaPI482276_01g020040.1 Cam01g2004 119086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2004 788 Gene3D - 689 787 - -
Cam01g2004 788 PANTHER UNCHARACTERIZED 154 433 IPR008547 -
Cam01g2004 788 SMART tSNARE_6 689 756 IPR000727 -
Cam01g2004 788 CDD SNARE_syntaxin1-like 700 753 - -
Cam01g2004 788 FunFam Syntaxin 132 687 787 - -
Cam01g2004 788 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 700 756 IPR000727 -
Cam01g2004 788 SUPERFAMILY t-snare proteins 530 749 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cam01g2004 788 SMART SynN_4 526 653 IPR006011 GO:0016020(InterPro)
Cam01g2004 788 CDD SynN 534 681 IPR006011 GO:0016020(InterPro)
Cam01g2004 788 Pfam Eukaryotic protein of unknown function (DUF829) 196 433 IPR008547 -
Cam01g2004 788 Pfam Syntaxin 534 729 IPR006011 GO:0016020(InterPro)
Cam01g2004 788 SUPERFAMILY alpha/beta-Hydrolases 190 433 IPR029058 -
Cam01g2004 788 Coils Coil 538 558 - -
Cam01g2004 788 Gene3D - 527 657 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0820 Cam-Chr1:9174616 Cam01g2004 Cam-Chr1:33268374 8.30E-60 dispersed
Cam01g2004 Cam-Chr1:33268374 Cam04g0520 Cam-Chr4:18600528 2.30E-56 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2004 K08486 - csv:101222646 634.409