Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2007 ATGGATAATCTCTCACATTCTCGTCTCTCCAACAGGGGTTCTACCTCGCTTTCTAAGAAAATCTGTAATGGCAGTAATGGCGGTGGTCCTTTTGTAGCTCAAACTATCTACGACGACGTTTATGGCGGTCCTCCCAAGTTTGGAGTCTCTGCTTTGTCTCCTCGTTTCGAAGACTACGGTGAGATTTTCGGGAGCTTCCACGCCCTTCGTGCTTCCTCGATTCCGATTCTTGATCTTCCTGCTGTCGATGAATCTGAGGTTTTCTTCGACGCTCGGAGCTCTGCATTTGACTATTCGGAAGTTTTTGGCGGGTTTGATGGTCTGGATTTTGCGATTTCTTATGACGAACTGGTTGGTCCATCCAAGGCCGTTGATGATGGCTCTTCCGACGAAGCTTGGACTCCAGCAGGAACTGAATCTTTGTCAGACTGTTCGGATCATTCTGGAAATTCTCATTGTATGTCAAATGGAGACTCTAATCAGTCATTTGGAGGAAGCACTGAGTTTTGCATATCGTATAACAAGGTTAACCGAGAAAGCAATGGAAATATATCAAATGGGAAGATACACGTAACCCAGTTGGAGATGCGTCCTGGATTCTCATATCTGGTTGATGAAGCAAACCCCTCGCCGAAGGCAACAGATGATGATCCATCACTGCAGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGCAAACATCCAAGGAACACAATGCCACCCCTAGTGGACAGTAATGACTCTGGACCGTTATTCGAGGATAGCCTTATTTCTCAAAATGGATGTGGTAGAGATGTTTGTCATTCTCACGAGGATTTCATAACCGTATCTGAAATAAGCCTTAGAACTGAGCCCTCTCAAGTGCCACCGCCTTCTCGACCTCCTCCCAAGTTTGCTACCAAAAAGGGGGACTACTCTAAAAGGACTTTGAGTTGTGGGGAAGCTGCTTCTGAAATAATTTCGGACGACCATTCTCTTCCTTTATTTGATGTGGAGGTAGATGCTAGCTCATCTGCAGCGGCCTCTGCTGCAGCGATGAAAGAAGCAATGGATAAAGCTCAAGCACAGTTACAAAATGCAAAAGATTTGTGGGGGAGGAAGAAGGAAGGGGTCCATGGACGGATGAGACTGGATTCAAGAAATGATATGAGAGAAAAGGAAGGAAATTTGACTAAGATTCCAAATCGATTTAAGAGTTGGGCCAATGAAAGTGCGCAGGGTATTGGGGAAATTCATGGCAACGAAATGAATTTGCCTGCTAGAGAGGAGAGGCACAAGGATGTGAGGGCAACTGAAGTTTGTTCAACACACTATGGAGAAGAGGAACTTTTAACAGCTGCTGAAAAGACCGTACCAATTAGAAGTGGGAGTAGATTTCTTGTGTCCGAGAACTATGATTGTTGCAGTGAATGGAAAGATGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCTGAAAAGGAATTTGAGTCGCTGAGTAATGATGCAATTTCCAACTTTGTGACTGGACAAATGGAAATAGAGACCAATGCATGGGAGAACGATAAAGACCAAGACAAGAAAGCAAAACCATTCCATACAGCTCATGTTCTGAATGAGGAGGTGAAGCATTTGGAGAATCTGGTCCAGGGAAAGGAGGAAGATAAGATAAAACGAAAGCCAAATAAAAACGAGACTAGGCAAAAAGAGCAGGTGAAATTAAAAATTCACCAAGGTGTTTGTGATCTTGAAGCAAATGATAGAAAATTTGAAGTTGCTCAGGAGTTTATGGAAGTAAAAAAGCAAATGTTTTATGCTAGTGAACCAGAGAAACGTGAAAAGCCTATTGAGTTTAGACAACTGGACAGTGAGCTAAAAGTTGAGCAACCTGTTTCACCAAGGGATATTGAACAAGAAAAGAAAAAGGTTGAAAGAAAGGAAAATGGAAATATTCTCAAGGAGTCTCATAGAAAAGAAAACAATGCAAACAAAATGGAAGCCACTGAGAATGAGAAAAGAGAGATGCCCACAGAGGCTTCTGAAAGGGAAAAACTTGAGCAAAAAATGAGGGTGTTTCTCGAGCAACCAGATGATAAGAAAAGACTGAATTTGGTTCTTGAGGACGACAACTTTAAGGGACAGATGGATCATGAAAGACAACTGGAAGGAGTTCATGGGATGGAAGATCATGGGGAAAGGGGAAAGGAGGCTGCCAAAGTTGGAGTAAGTGAGACACCTGAATTAGCTCATGAGAGAGAAGATGGCAACAAATGGCCACAAGATTTTCAGTACAGAGAAGTATGTGAAAAAGGAGTTGATTCATTTCAGCATTTGAACATTGAAGGCATGCCAAGAGATGTGGGTAAGTGTAAAGTGACTCCGATGTTGGTTAAAGATTCACAAGATAGCGCAGATCTCAAGGGTACAAGTTTGGAGTATGATGAATTAGAGACATTGGAGGACAGACACAAAGTAAATTCAACAATAGGATCTCAAGTATATGTGGAAGTGAGTGATTTGGGGACATCTGCTGCTGCATGTCAAATGAACAATGACAAAGACCATTTACCTATGGGACTAGCATGTCCAACGGGAATGTCTGAAGAATTCTCTGTTGTAGATGAAAGTGGTGAGAGGAAGACCATAGTTACAGTTAATGAAAATCTTCAATTTAACAAAAATCCTTGTGTGCCGAGTGTATGCCAGGCAGAGATAGAACACCGTAAACTTCCAGTTGAAATGGAAGATGCAGATATTCAACTTTCTTTCGATGAATTGACTAAAAGAGCAGCCAAAGAAACAGGCTTTCAGCCCGGACCTGGACATACACAATCAGAACCAACTAATTCGGAAGATGCACTTTCATCTGAAAACTCAACAAGCATGGATGCGGGAGAGAACGTAGTTAAGATTGAAGATATGAAAACATCACTTCCTCTGTACAGAAGCAATGAGAAAGCAGGACAGGCTGATGAATGCATGGAAGAGTTTGTAGGGAGAAAGAAGTCTGTTACCAGAATGGGTTCTGATCCTGAACATCCAGGAAGCAACTTGTTCTGTCGTATGGAAGATAAAGTGAAGCCCTCTGACCAGGTTGAAGATAAGGGACAGAAAGTGTCAGTTCAGGGGGTCAATGTAAGGGCTGAAAAAGGAAGTGGATTGAAGTCAACTTGGCCAAATATTTCAGAAAGGACGCAAAAGAGTGGGGAATTCTCCCGTGAGGTCAATGCAAATCAGGCCCCAGAAAGAAAGGAAAAGATTGTAAACCAGAGCCATACATCTAAAGGAAAAGAGAGTGAGAGAGTGAGGAGTGAAGCAGAATTTGAGAACGACATTCTTCGAAAATTGGAAGAAGAGAGGGAGAGGGAAAGGGAGAGAGAAAAGGATAGAATGCCTATTGACAGAATTTCTCTTGAACCACGAGATAGAGTAGGTACCGAAGCTCGTGAAAGGGCAGAAAGGGCTGCTCTGGAGAGGATGACTGCTGAAGCCCGACAAAGAGCATTGGCTGAGGCACGTGAAAGATTGGAAAAGGCATGTGCAGAGGCGAGAGAAAATTCATTGGCTGGGAAGGGGGCAACTATGGAGTCAAGGGTAAAGGCAGAGCGTGCCGCTGTAGAAAGAGCAACTGCAGAGGCCAGGGAGCGAGCTGCGGAGAAAGCCATGTCTGACAAGACTTCCTTTGGGGCAAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTTCCAGAAATAATGAAATGAGACAGAAGTCTTCATCCTCCGGTCAGCCCAGCCTACAATCTCTGAGCTTTGGCTCTGCTGCGGCTTCAAGATATGCCTACTACTCGGCTTATGATGAGAGGAATGAGGGTGTTGATGGTGAATCGCCTCAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCAAAAGCTCTGGCAGAAAAAAATATGCGTGATCTTCTGGCACAAAGAGAGCAAGCTGAGAGAAATAGATTAGCTGAGACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAACTTGCGTGCCTTGCTTTCTACATTGCAATATATCCTTGCACCTGATAGTGGTTGGCAGCCAATTCCCTTAACAGAAGTTATAACCGCCGCTGCTGTAAAGAAAGCGTACAGGAAAGCCACTCTGTGTGTTCATCCAGACAAATTGCAACAACGGGGTGCAAGTATTCAGCAAAAATATATATGCGAGAAGGTCTTTGATCTACTAAAGGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGAGATGTCCTCACAGGTACGAGCGCCTCGGGGAGGATCCTACCGTTAGCTTGTTGGAAGGAAGGCTGAAGAGGGCAACCAGTTTGCCAACTCGAGTACTCGGTTCTGGCTCGAGGAAACTGACATCTGAGATTATATTTCCCGAGTTTGCTCAACCGAAACAGAAGCAGTCAAAGAAAGCTAACAAAGGAGGACACCCTCTTTTCAGTTTCTTTGATTTTCGCCGCAAGAGGAAGTCAACAGCCAGGCCTGAATTTGCAAGGTATCTTGAGTATTTGAAGGAAGGAGGACTGTGGGATTTGAAAGCAAATGCGCCTGTAATCTACTTTAAATGA 4635 43.65 MDNLSHSRLSNRGSTSLSKKICNGSNGGGPFVAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVDESEVFFDARSSAFDYSEVFGGFDGLDFAISYDELVGPSKAVDDGSSDEAWTPAGTESLSDCSDHSGNSHCMSNGDSNQSFGGSTEFCISYNKVNRESNGNISNGKIHVTQLEMRPGFSYLVDEANPSPKATDDDPSLQTNDDNYLNIDFDTGKVKGKHPRNTMPPLVDSNDSGPLFEDSLISQNGCGRDVCHSHEDFITVSEISLRTEPSQVPPPSRPPPKFATKKGDYSKRTLSCGEAASEIISDDHSLPLFDVEVDASSSAAASAAAMKEAMDKAQAQLQNAKDLWGRKKEGVHGRMRLDSRNDMREKEGNLTKIPNRFKSWANESAQGIGEIHGNEMNLPAREERHKDVRATEVCSTHYGEEELLTAAEKTVPIRSGSRFLVSENYDCCSEWKDATEFFELARADISEKEFESLSNDAISNFVTGQMEIETNAWENDKDQDKKAKPFHTAHVLNEEVKHLENLVQGKEEDKIKRKPNKNETRQKEQVKLKIHQGVCDLEANDRKFEVAQEFMEVKKQMFYASEPEKREKPIEFRQLDSELKVEQPVSPRDIEQEKKKVERKENGNILKESHRKENNANKMEATENEKREMPTEASEREKLEQKMRVFLEQPDDKKRLNLVLEDDNFKGQMDHERQLEGVHGMEDHGERGKEAAKVGVSETPELAHEREDGNKWPQDFQYREVCEKGVDSFQHLNIEGMPRDVGKCKVTPMLVKDSQDSADLKGTSLEYDELETLEDRHKVNSTIGSQVYVEVSDLGTSAAACQMNNDKDHLPMGLACPTGMSEEFSVVDESGERKTIVTVNENLQFNKNPCVPSVCQAEIEHRKLPVEMEDADIQLSFDELTKRAAKETGFQPGPGHTQSEPTNSEDALSSENSTSMDAGENVVKIEDMKTSLPLYRSNEKAGQADECMEEFVGRKKSVTRMGSDPEHPGSNLFCRMEDKVKPSDQVEDKGQKVSVQGVNVRAEKGSGLKSTWPNISERTQKSGEFSREVNANQAPERKEKIVNQSHTSKGKESERVRSEAEFENDILRKLEEEREREREREKDRMPIDRISLEPRDRVGTEARERAERAALERMTAEARQRALAEARERLEKACAEARENSLAGKGATMESRVKAERAAVERATAEARERAAEKAMSDKTSFGARERMERSVSDKFSASSRNNEMRQKSSSSGQPSLQSLSFGSAAASRYAYYSAYDERNEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILAPDSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEERRCPHRYERLGEDPTVSLLEGRLKRATSLPTRVLGSGSRKLTSEIIFPEFAQPKQKQSKKANKGGHPLFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 1544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33300403 33307264 + CaPI482276_01g020070.1 Cam01g2007 119089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2007 1544 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 1434 - GO:0005737(PANTHER)|GO:0030276(PANTHER)|GO:0031982(PANTHER)|GO:0043231(PANTHER)|GO:0072318(PANTHER)|GO:0072583(PANTHER)
Cam01g2007 1544 MobiDBLite consensus disorder prediction 1214 1267 - -
Cam01g2007 1544 Gene3D DnaJ domain 1307 1434 IPR036869 -
Cam01g2007 1544 Coils Coil 1100 1127 - -
Cam01g2007 1544 Coils Coil 1299 1334 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 124 149 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 1056 1076 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 1051 1159 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 1078 1159 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 214 229 - -
Cam01g2007 1544 CDD DnaJ 1382 1427 IPR001623 -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 934 966 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 628 685 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 1287 1306 - -
Cam01g2007 1544 FunFam Auxilin-related protein 1 1305 1434 - -
Cam01g2007 1544 Coils Coil 536 556 - -
Cam01g2007 1544 Coils Coil 1160 1187 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 133 149 - -
Cam01g2007 1544 ProSiteProfiles dnaJ domain profile. 1370 1444 IPR001623 -
Cam01g2007 1544 SUPERFAMILY Chaperone J-domain 1291 1435 IPR036869 -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 1242 1267 - -
Cam01g2007 1544 Coils Coil 350 370 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 939 966 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 1214 1241 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 203 256 - -
Cam01g2007 1544 MobiDBLite consensus disorder prediction 289 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2007 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2007 Cam-Chr1:33300403 Cam01g2543 Cam-Chr1:37023077 6.80E-28 dispersed
Cam04g0202 Cam-Chr4:7329983 Cam01g2007 Cam-Chr1:33300403 6.10E-57 transposed
Cam05g2109 Cam-Chr5:29584841 Cam01g2007 Cam-Chr1:33300403 2.20E-30 transposed
Cam08g1034 Cam-Chr8:16591330 Cam01g2007 Cam-Chr1:33300403 1.50E-49 transposed
Cam01g2007 Cam-Chr1:33300403 Cam05g2061 Cam-Chr5:29277813 2.30E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1001 . Blo16g00054 . . . Bpe13g00436 . . . . . Cma07g00476 Car03g00672 Car07g00419 Sed14g1133 . . Bhi03g01325 Tan03g2000 Cmetu08g1336 . Hepe04g1527 . . Cla01g01921 Cam01g2007 Cec04g1666 Cco04g1727 Clacu01g2028 Cmu01g1903 Cre04g1578 . . . . . . . Cme08g00861 . . . . . . . . . Cmo03g00766 Cmo07g00476 . . . . . . . . . . . . . . . . . . . . . . Chy02g00632 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41