Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2014 ATGGAGGTTTCCAAAATACTCCATATGAATTCAGGAGTTGGAGACAAAAGCTATGCCAAAAACTCCTTACTTCAGCAAAAGGTAATAATATCCTTTGCGTGGCCAATCATAAGGGAAGCCATTGAAGACTTGTGCAGTGAAAACATTCCAATTACCACTTTAAGCATAGCAGATTTGGGATGTTCTTCAGGACCAAACACTCTTATGATTGTCTCCAAATTAATCAAACAATTTCATAAAAACCTTCACAATAAACCACTCCAATATCAAATCTTCTTCAATGATCTCCCTGCAAACGATTTCAATGCCATTTTTAGATCCTTGCCAAATTTGTTGGAAGATTTGAAGAACCAAATTGGAGCTGATTTTGGAAGATGTTTCTTCAATGGAGTGCCGGGTTCTTTTTATGGAAGGCTCTTTCCCAACAAAAGTTTGCATTTTGTTCATTCTTCTTACAGTCTTCAGTGGCTGTCTCAGGTACCTGAAGGGATGGAGATGAAAAACAAAGGGAACATATTCATAGACAGTACAAGTCCAAAGAACGTGGTTGAAGGCTTTTACAGTCAATTTCAAAAGGACTTTTCACTGTTTTTAAAGTGCCGTGGAGAAGAAATAGTAGGTGGTGGACGAATGATTCTTACTATTTCAGGAAGAACAGATGAATATCCACCAAACAAAGATTATTGTTATGCTTTGAAATTTTTTAATTTAGCTCTCAATAACATGGTTGCAGAGGGGATCTTGGAAGAGGAGAAAGTTGATAGATTCAATATTCCAATCTTCATGCCAAATCCAGAGGAAATAAAAGTAGAGGTTTTGAAAGAAGGAAGCTTCATCATAAATTATCTTGAAGTGTCAACAATTGATTGGAACTTCTACAATAATGATGAATTTGATGGATCAAATGTGTGTACTGTTGATAGCTGCAGTTATTATTTTGCAAAATGTATGAGAGCAGTGTTTGAACCACTTTTAATTCCTAACTTTGGAGAAGGATCAAACACTCTAATGATTGTTTCCAATATGATCAAACAAGTAGAAGAGATTCGTCAAAATAAGCTTCACAAAAAGCCTTTGGAGTATCAGATCTTCTTGAATGACCTCCATGGAAATGACTTCAATGCCATCTTTACATCATTGCCAAACTTCCTTGAAGATTTGAGGACCCAAATTGGAGGTGATTTTGGTCTATATGTTTCTTCAATGGTTCCAATGGGGATAGAGAATAACAAAAAGAACATTTACATAGGTAGTACAAGTCCAAAGAGTGTGGTTGAAGCTTATTATAAGCAATTTCAAAAGGATTTTTCAATGTTTTTGAAGTGTCGAGGTGAGGAATTGGTAATGGGTGGACGTATGGTTTTAACATTAGTTGGAAGAATAAGTGAAGATCCATCAAAATCTCGAGCTCACTATATTTTGGAGCTTTTGGCTTTAACTCTCAATACCATGGTAGCTGAGGGAATTGTGGAAGAGAAAATGGCAGATTCATTCAATATTCCAAGCTATATGCCATCGCCAAGGGAAGTGGAAGCGGAGGTTGTGAAGGAAGGAAGTTTCATCCTCAATCTATTGGAAGTTTCAAGGATTAACTTAAACATTAACAAAACTGAATCCTGCCCCATGGCCAACACTGATGGCTATGATTTTGCCAAGTGTGTGCAATCTGTGGCTGAACCACTTTTGATTCATCATTTTGGAGAAGCCATTGTGGAAGAGTTATTTTGGCGATACAAGAAAATAGTTACCGATTGCATGGCAAAAGAGAAGGTTATGGAATGTATCAACCTCACTATCTCATTAACTAAAATCAAATCATCAAAACTTACTACAACTATTACTATGCCATGTGATGAAAGTTCCAAAAGGTGA 1872 36.49 MEVSKILHMNSGVGDKSYAKNSLLQQKVIISFAWPIIREAIEDLCSENIPITTLSIADLGCSSGPNTLMIVSKLIKQFHKNLHNKPLQYQIFFNDLPANDFNAIFRSLPNLLEDLKNQIGADFGRCFFNGVPGSFYGRLFPNKSLHFVHSSYSLQWLSQVPEGMEMKNKGNIFIDSTSPKNVVEGFYSQFQKDFSLFLKCRGEEIVGGGRMILTISGRTDEYPPNKDYCYALKFFNLALNNMVAEGILEEEKVDRFNIPIFMPNPEEIKVEVLKEGSFIINYLEVSTIDWNFYNNDEFDGSNVCTVDSCSYYFAKCMRAVFEPLLIPNFGEGSNTLMIVSNMIKQVEEIRQNKLHKKPLEYQIFLNDLHGNDFNAIFTSLPNFLEDLRTQIGGDFGLYVSSMVPMGIENNKKNIYIGSTSPKSVVEAYYKQFQKDFSMFLKCRGEELVMGGRMVLTLVGRISEDPSKSRAHYILELLALTLNTMVAEGIVEEKMADSFNIPSYMPSPREVEAEVVKEGSFILNLLEVSRINLNINKTESCPMANTDGYDFAKCVQSVAEPLLIHHFGEAIVEELFWRYKKIVTDCMAKEKVMECINLTISLTKIKSSKLTTTITMPCDESSKR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33334622 33343009 - CaPI482276_01g020140.1 Cam01g2014 119096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2014 623 Gene3D - 507 588 IPR042086 -
Cam01g2014 623 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 331 604 IPR029063 -
Cam01g2014 623 Gene3D - 6 327 IPR042086 -
Cam01g2014 623 Gene3D Vaccinia Virus protein VP39 21 289 IPR029063 -
Cam01g2014 623 Pfam SAM dependent carboxyl methyltransferase 39 331 IPR005299 GO:0008168(InterPro)
Cam01g2014 623 Pfam SAM dependent carboxyl methyltransferase 400 603 IPR005299 GO:0008168(InterPro)
Cam01g2014 623 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 332 IPR029063 -
Cam01g2014 623 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 332 404 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Cam01g2014 623 Gene3D Vaccinia Virus protein VP39 328 500 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2014 K21483 - - csv:101218551 513.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2014 Cam-Chr1:33334622 Cam06g0891 Cam-Chr6:12940473 7.50E-111 dispersed
Cam01g2014 Cam-Chr1:33334622 Cam01g2015 Cam-Chr1:33345885 1.60E-283 tandem
Cam01g2014 Cam-Chr1:33334622 Cam05g2056 Cam-Chr5:29243884 5.10E-75 wgd
Cam01g2014 Cam-Chr1:33334622 Cam07g0883 Cam-Chr7:21896185 2.30E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1013 . . . . . . Bma09g00087 . . . . . . . . . . . . . . . . . Cla01g01929 Cam01g2014 Cec04g1672 Cco04g1736 Clacu01g2035 Cmu01g1910 Cre04g1587 . Cone12ag0775 . . . . . . Blo05g00805 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03263 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218