Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2019 ATGCAGCAGTCCACCGAAGCAAAGGAGTTGTTTATGAAGCCAGTGCTGGTAACAAAGTGCTGCTACACATCCATTTTAATGGCCTTTTGGTTCCTCTTCGACCATCATTTTCTTAAAAACAGTACTCACAGACCTGACCCTGACACTCCAAGAACTTACCCTTCTGGGTTTCCCCAAATGGCAGGAATTCTTTCCATAACTATTTTAGTGTTGGTTTCAAAAGTTTGGTGGAGACAGAGGAGCAAGAATGTTGGAGGAATTCCTGGTTACTTGGGGTTACCTTTTGTAGGGGAAACCTTCTCTTTTCTTTCTGCTAATAACAGTACCAAAGGGTGTTACCACTTTGTCAGGCTCCGCAGGTTGTGGCATGGAAGATGGTTCAAGACAAGGCTATTCGGAAAGATACACGTGTTTGTTCCTAGTGCAGAAGGAGCAAAAGCAATATTTGCCAATGATTTTGTCCAATTCAACAAGGGATACGTGAAATCCATGGGAGATGCTGTTGGAGAGAAGAGTTTACTATGTGTTTCCCATGAGAATCACAGAAGGATTAGACGTCTTCTAGCAGATCCTTTCTCCATGACTTCTCTGTCTAAGTTTGTCAAAGAATTTGACGACATGCTCTCCAAAAGGCTAAAGAAACTAGAAAAAGATGGGAAAAGTTTTGTACTGCTTGATTTTAGCATGAAGATAACATTCGATTCCATGTGCAATATGCTAATGAGTCTAAGAGATGAATCTACACTCAGACAGATTGAGAAAGACTGTACAGCCGTCTCTGATGCCATGTTATCTTTCCCATTCATGATTCCAGGAACTAGATACTACAAAGGCATCAAGGCACGAAACCGACTCATGGAAAGATTTAGAGAGATAATTTCCCGACGGCGGAGGGGAGAGGAGTCACCAGAAGACTTCCTACAGTCGATGTTGCGGAGAGATTCATATCCTTCAAATGAAAAGCTGGACGACTCAGAGATAATGGATAACCTATTGACACTGATAATTGCAGGCCAAACCACCACAGCTGCTGCTATGATGTGGAGTATCAAATTCCTGGACGAGAACAGAGAGGCCCAAGAAAGGCTACGGGAAGAACAATTGTCAATTCTAGGAAAGAAGGAACATGGAGAATTGCTTACCCTTGAAGATCTTAACAAAATGTCCTACGGTTCAAAGGTTGTCAAAGAGACGTTGAGAATGTCCAATGTTTTGCTGTGGTTTCCTCGTGTGGCACTAGGAGATTGCAGATTAGAAGGTTTTGAAATAAAGGAAGGATGGCATGTGAACATCGATGCAACATGTATTCATTATGACCCAGATTTGTACAAGGACCCCATGCAATTCAACCCTTCCAGATTTGATGAAATTCAAAAGCCATACAGTTTCATACCTTTTGGATCTGGGCCCAGGACCTGTCTTGGAATTAACATGGCCAAATTAACAATGTTGGTCTTCTTGCACAGAATGACTGGAGGGTACAAGTGGACGGTTGATGATCCAGATCCTTGCCTTGAAAAGAAGGCACACATCCCTAGACTGAGAAGCGGCTGCCCCATTACTTTGAAGACCTTGTAA 1578 42.65 MQQSTEAKELFMKPVLVTKCCYTSILMAFWFLFDHHFLKNSTHRPDPDTPRTYPSGFPQMAGILSITILVLVSKVWWRQRSKNVGGIPGYLGLPFVGETFSFLSANNSTKGCYHFVRLRRLWHGRWFKTRLFGKIHVFVPSAEGAKAIFANDFVQFNKGYVKSMGDAVGEKSLLCVSHENHRRIRRLLADPFSMTSLSKFVKEFDDMLSKRLKKLEKDGKSFVLLDFSMKITFDSMCNMLMSLRDESTLRQIEKDCTAVSDAMLSFPFMIPGTRYYKGIKARNRLMERFREIISRRRRGEESPEDFLQSMLRRDSYPSNEKLDDSEIMDNLLTLIIAGQTTTAAAMMWSIKFLDENREAQERLREEQLSILGKKEHGELLTLEDLNKMSYGSKVVKETLRMSNVLLWFPRVALGDCRLEGFEIKEGWHVNIDATCIHYDPDLYKDPMQFNPSRFDEIQKPYSFIPFGSGPRTCLGINMAKLTMLVFLHRMTGGYKWTVDDPDPCLEKKAHIPRLRSGCPITLKTL 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33404926 33408945 - CaPI482276_01g020190.1 Cam01g2019 119101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2019 525 CDD CYP90-like 119 522 - -
Cam01g2019 525 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 PRINTS P450 superfamily signature 337 354 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 PRINTS P450 superfamily signature 473 484 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 PRINTS P450 superfamily signature 393 404 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 PRINTS E-class P450 group I signature 326 343 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 PRINTS E-class P450 group I signature 432 456 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 PRINTS E-class P450 group I signature 346 372 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 FunFam cytochrome P450 90A1-like isoform X1 77 525 - -
Cam01g2019 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cam01g2019 525 SUPERFAMILY Cytochrome P450 77 523 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 PANTHER CYTOCHROME P450 26 88 494 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
Cam01g2019 525 Pfam Cytochrome P450 92 506 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam01g2019 525 Gene3D Cytochrome P450 77 525 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2019 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2019 Cam-Chr1:33404926 Cam09g0956 Cam-Chr9:9853401 1.50E-80 dispersed
Cam01g2019 Cam-Chr1:33404926 Cam08g1956 Cam-Chr8:25471347 1.90E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1026 . . . . . . . . . . Cma03g00726 . Car03g00664 . Sed11g1049 . Cpe10g00632 Bhi03g00926 Tan03g2013 Cmetu03g0864 . Hepe04g1544 . . Cla01g01935 Cam01g2019 Cec04g1677 Cco04g1741 Clacu01g2040 Cmu01g1916 Cre04g1592 . . . . Lsi01g00654 . . Cme08g00877 . . . . . . . . . Cmo03g00751 . . . . . . . . . . . . . . . . . . . . . . Csa06g03271 Chy02g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013553 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26