Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2041 ATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTATTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCAGCATCAGCAGCATCATCATCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTTCTCTAGGCGTCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCCACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCCACCACCAAGATCTTAA 1008 50.3 MSGFFTLGGGGGGGGGREEHQENQQNNRPNEIIPPDSSLFWYKGNVEVWQQQQQQHQQHHHHHHHHHHHQEQALFQTQSRTTPYSASLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHPHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFPPPRS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33548445 33549674 - CaPI482276_01g020410.1 Cam01g2041 119123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2041 335 MobiDBLite consensus disorder prediction 1 37 - -
Cam01g2041 335 MobiDBLite consensus disorder prediction 50 100 - -
Cam01g2041 335 Pfam Domain of unknown function (DUF702) 114 265 - -
Cam01g2041 335 MobiDBLite consensus disorder prediction 169 194 - -
Cam01g2041 335 NCBIfam putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Cam01g2041 335 MobiDBLite consensus disorder prediction 169 188 - -
Cam01g2041 335 MobiDBLite consensus disorder prediction 74 100 - -
Cam01g2041 335 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 329 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cam01g2041 335 MobiDBLite consensus disorder prediction 56 70 - -
Cam01g2041 335 NCBIfam LRP1 C-terminal domain 217 264 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2041 Cam-Chr1:33548445 Cam09g1389 Cam-Chr9:19972497 1.40E-50 dispersed
Cam02g2366 Cam-Chr2:36169706 Cam01g2041 Cam-Chr1:33548445 7.30E-35 transposed
Cam03g1169 Cam-Chr3:23152250 Cam01g2041 Cam-Chr1:33548445 8.20E-28 transposed
Cam05g2879 Cam-Chr5:35818112 Cam01g2041 Cam-Chr1:33548445 5.90E-29 transposed
Cam01g2041 Cam-Chr1:33548445 Cam05g2038 Cam-Chr5:29063285 1.70E-53 wgd
Cam01g2041 Cam-Chr1:33548445 Cam07g0908 Cam-Chr7:22294229 5.50E-52 wgd
Cam01g2041 Cam-Chr1:33548445 Cam08g1930 Cam-Chr8:25232297 1.90E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51336 PF05142 DUF702 2.40E-66 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2041 K27807 - csv:101207689 495.738