Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g2041 | ATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTATTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCAGCATCAGCAGCATCATCATCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTTCTCTAGGCGTCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCCACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCCACCACCAAGATCTTAA | 1008 | 50.3 | MSGFFTLGGGGGGGGGREEHQENQQNNRPNEIIPPDSSLFWYKGNVEVWQQQQQQHQQHHHHHHHHHHHQEQALFQTQSRTTPYSASLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHPHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFPPPRS | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 33548445 | 33549674 | - | CaPI482276_01g020410.1 | Cam01g2041 | 119123 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g2041 | 335 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cam01g2041 | 335 | MobiDBLite | consensus disorder prediction | 50 | 100 | - | - | |
Cam01g2041 | 335 | Pfam | Domain of unknown function (DUF702) | 114 | 265 | - | - | |
Cam01g2041 | 335 | MobiDBLite | consensus disorder prediction | 169 | 194 | - | - | |
Cam01g2041 | 335 | NCBIfam | putative zinc finger domain, LRP1 type | 116 | 158 | IPR006510 | - | |
Cam01g2041 | 335 | MobiDBLite | consensus disorder prediction | 169 | 188 | - | - | |
Cam01g2041 | 335 | MobiDBLite | consensus disorder prediction | 74 | 100 | - | - | |
Cam01g2041 | 335 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 329 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Cam01g2041 | 335 | MobiDBLite | consensus disorder prediction | 56 | 70 | - | - | |
Cam01g2041 | 335 | NCBIfam | LRP1 C-terminal domain | 217 | 264 | IPR006511 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g2041 | Cam-Chr1:33548445 | Cam09g1389 | Cam-Chr9:19972497 | 1.40E-50 | dispersed | |
Cam02g2366 | Cam-Chr2:36169706 | Cam01g2041 | Cam-Chr1:33548445 | 7.30E-35 | transposed | |
Cam03g1169 | Cam-Chr3:23152250 | Cam01g2041 | Cam-Chr1:33548445 | 8.20E-28 | transposed | |
Cam05g2879 | Cam-Chr5:35818112 | Cam01g2041 | Cam-Chr1:33548445 | 5.90E-29 | transposed | |
Cam01g2041 | Cam-Chr1:33548445 | Cam05g2038 | Cam-Chr5:29063285 | 1.70E-53 | wgd | |
Cam01g2041 | Cam-Chr1:33548445 | Cam07g0908 | Cam-Chr7:22294229 | 5.50E-52 | wgd | |
Cam01g2041 | Cam-Chr1:33548445 | Cam08g1930 | Cam-Chr8:25232297 | 1.90E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51336 | PF05142 | DUF702 | 2.40E-66 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g2041 | K27807 | - | csv:101207689 | 495.738 |