Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g2046 | ATGGAAGCTGCGTTGAAGATGGGTCTCATGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTCAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTTAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCTGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCGTCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCCTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGAACCGGCCCTGTAG | 885 | 50.73 | MEAALKMGLMKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEAEGEEKNNHSSVSAPLQLQQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLEPAL | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 33581199 | 33582083 | + | CaPI482276_01g020460.1 | Cam01g2046 | 119128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g2046 | 294 | PANTHER | GATA TRANSCRIPTION FACTOR | 43 | 282 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Cam01g2046 | 294 | CDD | ZnF_GATA | 215 | 263 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam01g2046 | 294 | ProSitePatterns | GATA-type zinc finger domain. | 216 | 241 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam01g2046 | 294 | PIRSF | Txn_fac_GATA_plant | 10 | 291 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Cam01g2046 | 294 | SMART | GATA_3 | 210 | 264 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam01g2046 | 294 | MobiDBLite | consensus disorder prediction | 66 | 97 | - | - | |
Cam01g2046 | 294 | ProSiteProfiles | GATA-type zinc finger domain profile. | 210 | 246 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam01g2046 | 294 | MobiDBLite | consensus disorder prediction | 189 | 217 | - | - | |
Cam01g2046 | 294 | Gene3D | - | 207 | 287 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cam01g2046 | 294 | MobiDBLite | consensus disorder prediction | 52 | 97 | - | - | |
Cam01g2046 | 294 | MobiDBLite | consensus disorder prediction | 146 | 177 | - | - | |
Cam01g2046 | 294 | FunFam | GATA transcription factor | 205 | 289 | - | - | |
Cam01g2046 | 294 | Pfam | GATA zinc finger | 216 | 249 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam01g2046 | 294 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 209 | 272 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g2046 | Cam-Chr1:33581199 | Cam11g0414 | Cam-Chr11:5563017 | 7.10E-35 | dispersed | |
Cam01g2046 | Cam-Chr1:33581199 | Cam07g0919 | Cam-Chr7:22649407 | 7.50E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51337 | PF00320 | GATA | 1.20E-16 | CL0167 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g2046 | - | - | - | 0.0 |