Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2046 ATGGAAGCTGCGTTGAAGATGGGTCTCATGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTCAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTTAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCTGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCGTCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCCTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGAACCGGCCCTGTAG 885 50.73 MEAALKMGLMKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEAEGEEKNNHSSVSAPLQLQQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLEPAL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33581199 33582083 + CaPI482276_01g020460.1 Cam01g2046 119128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2046 294 PANTHER GATA TRANSCRIPTION FACTOR 43 282 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cam01g2046 294 CDD ZnF_GATA 215 263 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2046 294 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2046 294 PIRSF Txn_fac_GATA_plant 10 291 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cam01g2046 294 SMART GATA_3 210 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2046 294 MobiDBLite consensus disorder prediction 66 97 - -
Cam01g2046 294 ProSiteProfiles GATA-type zinc finger domain profile. 210 246 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2046 294 MobiDBLite consensus disorder prediction 189 217 - -
Cam01g2046 294 Gene3D - 207 287 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam01g2046 294 MobiDBLite consensus disorder prediction 52 97 - -
Cam01g2046 294 MobiDBLite consensus disorder prediction 146 177 - -
Cam01g2046 294 FunFam GATA transcription factor 205 289 - -
Cam01g2046 294 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2046 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2046 Cam-Chr1:33581199 Cam11g0414 Cam-Chr11:5563017 7.10E-35 dispersed
Cam01g2046 Cam-Chr1:33581199 Cam07g0919 Cam-Chr7:22649407 7.50E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51337 PF00320 GATA 1.20E-16 CL0167 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2046 - - - 0.0