Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g2074 | ATGATCAAGATTGGTTGGGGAGCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGTGTTGGATTTTGTGGTATCGTTTCATATTATAGTGGAGATTTCCCTCTCTCTTTTGGAAGGGATCAGAGGAATTCAACCCTGAGATTTACTCGTCGTTTTGCTCTGTTTAAATACCCTTTTGGGATCCTTATGGAACAGTGGAAGACGGGAGATTTCACTCAATCTATTGTACCAGCTGATTTAGTTCCTTCTTCGTCTCTTCAACCTCAGCCTGTCGCTGTGTCGTCCACTCGCCACCATAACAACCAGCTAACTGAATCCAGGTTAAGAGCAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAACTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCAGTTGTCATGGGGCCCCCATATTCCTACCCCGTTCCCGTTCCCGTTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGATCAGCCCTCTGCCCATTATGCTTCCAATTCACATATATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCAGAGGCGTAGTAATGCGGAAAGATGCGACGAGTCCAACGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCTACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCACAAAGTAAAGAAAAAAGTGTTACTGACTGCAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGTGTTGGCGACATCCCGAAACAGAACAACTGA | 1200 | 44.67 | MIKIGWGAGHPRGRGSWSARSGVGFCGIVSYYSGDFPLSFGRDQRNSTLRFTRRFALFKYPFGILMEQWKTGDFTQSIVPADLVPSSSLQPQPVAVSSTRHHNNQLTESRLRADAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYETLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAHYASNSHISSKQDSRSKSSDQQRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQSKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 33802738 | 33805497 | - | CaPI482276_01g020740.1 | Cam01g2074 | 119156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g2074 | 399 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 123 | 173 | IPR011598 | GO:0046983(InterPro) | |
Cam01g2074 | 399 | MobiDBLite | consensus disorder prediction | 311 | 336 | - | - | |
Cam01g2074 | 399 | Gene3D | - | 122 | 225 | IPR036638 | GO:0046983(InterPro) | |
Cam01g2074 | 399 | SMART | finulus | 129 | 179 | IPR011598 | GO:0046983(InterPro) | |
Cam01g2074 | 399 | CDD | bHLH_AtILR3_like | 128 | 202 | - | - | |
Cam01g2074 | 399 | MobiDBLite | consensus disorder prediction | 341 | 358 | - | - | |
Cam01g2074 | 399 | MobiDBLite | consensus disorder prediction | 296 | 310 | - | - | |
Cam01g2074 | 399 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 87 | 397 | IPR044579 | GO:0003700(InterPro)|GO:0006879(InterPro) | |
Cam01g2074 | 399 | Pfam | Helix-loop-helix DNA-binding domain | 124 | 174 | IPR011598 | GO:0046983(InterPro) | |
Cam01g2074 | 399 | Coils | Coil | 163 | 218 | - | - | |
Cam01g2074 | 399 | MobiDBLite | consensus disorder prediction | 365 | 399 | - | - | |
Cam01g2074 | 399 | MobiDBLite | consensus disorder prediction | 293 | 399 | - | - | |
Cam01g2074 | 399 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 124 | 193 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g2074 | Cam-Chr1:33802738 | Cam02g1185 | Cam-Chr2:23593294 | 4.10E-54 | dispersed | |
Cam01g2074 | Cam-Chr1:33802738 | Cam05g1646 | Cam-Chr5:24234879 | 1.10E-09 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51342 | PF00010 | HLH | 8.30E-09 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g2074 | - | - | - | 0.0 |