Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2086 ATGAAACGAGCCAATATCATCATTCTTCAATGGAGGAAATGGAGTCACTTCCAACCCAACCCCACTCCCGCTTACTTTTCCGGCAGGTGTTACAAAACGACATGTCGTCCTACAAAGCAGGAACGATCGAAATCAAATCTCATTATAAAAGGAAATTTCCACACTCTTCTTCGCTGTCAAGTTTCACCGCCTGTTTCCGCCGCCGTTGTTCTTCCGCCCACTTTTCCCCGATGGTCTCTGGTTTTCCCGACTTCAAAAACCGCCCACAGATTTCAATCCACCGGAATTCCGCCGCCAATCATGGGCTCTCTAGATAGTTCCGATGCCGGAATCGTCACCGTCGACGTCAAAACCGCCGAGAACCTCCTCCATTCCGGCTACGCTTTTCTCGACGTCAGGACTGTTGAGGAGTTCAAGGACGGGCATGTGGCGACGGAGAAGATCGTTAATATTCCGTATCTGTTAAATTCTCCAAATGGTAGGGTGAAAAATGCTCAGTTTCTGGCGGAAGTATCGGCGGTCTTTAAGAAAGACGACCGCCTCGTCGTGGGTTGTCGAAGCGGCGTCAGATCTTTGCTTGCTATTGATGATCTCCAAAATGATGGTTTCAAGCATTTGAAAGATCTAGGCGGAGGACATCTGGCTTGGTTGGAGAATGGATTACCTGTGGCTAATCCAAAAGGCAATCGGCACACCCGCCACTCGCAAACTTTTCTCCGGCAGCCTCTGGTTTTTCCGACCTCAAAACCCACTCACAATCTCATCGTGGCCTCCTCCGACAGTTCCAATGCCGGAGTCGTCACCGTCGACGTCGAGACGGCCAAGAAGCTGCTCGATTCCGGCTATCCTCTTCTGGACGTTAGGACCGTTGAGGAGTTCAGGAGAGGGCATGTGGCGACGGAGAAAATCGTCAATATTCCTTATCTGTTTAGTTTTGAACATGGTAGGGAAAAAAATGATCGGTTTCTAGAGGAGGTGTCGGCGGTCTTTAACAAAGACGACCGCTTCCTTGTGGTTTGCGCAATTGGTATTAGGTCTCTGGAAGCCACTCAAGAACTTCAGGATAATGGTTTCAATAAGGTGAAAGATCAGGGCGGAGGGTTTGAAGCTTGGGTGAAGAATGGATTCCCAGCAACAAGCAAAGATTTGCAGGGAAGATCGCAGTGTTTGTGTAGCGCCAGATTTGTCTTCCATAGTTCTACCTCTTCAACGATGGTGCTCGAGGCGACGATGATCTGTATTGACAACTCCGAATGGATGCGGAATGGCGATTACGCTCCTTCAAGATTTCAAGCTCAAGCAGATGCCATCAATCTTATTTGTGGAGCCAAGACGCAGTCTAATCCAGAGAATACGGTTGGGGTTCTCACAATGGCGGGAAAAGGTGTTCGTGTGCTGGTTACTCCTACCACTGACCTTGGCAAGATACTGGCATGCATGCACGGTTTGGAGATAGGTGGTGAGATAAACCTCGCAGCTGGCATCCAGGTGGCTCAGTTGGCCCTTAAGCATCGTCAGAACAAAAAACAGCAACAGAGGATTATAGTATTTGTTGGCAGTCCTGTCAAACATGAGAAGAAGTTACTGGAGATGATAGGAAGGAAGTTGAAGAAGAACAATGTGGCCCTTGACATTGTTGATTTTGGTGAAGAAGATGATGGCAAACCTGAAAAACTGGAAAGTCTTCTGGCAGCTGTGAACAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTGCTCTCTGATGTACTCATCAGTACTCCTATCTTTACGGGAGACGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCGGCTGCAGCAGCCGGTGGCGTATCTGGTTTTGATTTTGGGGTTGATCCCAACTTAGATCCTGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAGGCAGCTGCGAAAAAGGCTGCAGAGGAGAATACCAAGCAAGAAAAAGGAGCTGAGCAGCCATCTGGCTCACAGGATGCAACTATGACCGAGCGTTCTGGTCTTGCGACTTCTGATGCTGAAAACAAGGCTGCTGATTTAATGGATGATGAGAATGCGCTGCTACAACAAGCCCTTGCTATGTCAATGGATAATCCTTCTGCTACCAGTGACATACGAGACATTGACATGTCAGAAGCCGCATCAGATGATCCTGAGTTGGCACTTGCTCTTCAGTTGTCTGTGCAGGAAGGCTCCAGTGACTCGACAAGCCAGACAGACATGAGTAAATTATTGGCCGATCAGTCTTTTGTGTCTTCTATTCTTGCTTCACTTCCAGGCGTAGATCCAAATGATCCATCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCCGAGGAAAAGAAAGACGAGGACAAATCATCAAAGGAAGATGAGAAATGA 2424 48.14 MKRANIIILQWRKWSHFQPNPTPAYFSGRCYKTTCRPTKQERSKSNLIIKGNFHTLLRCQVSPPVSAAVVLPPTFPRWSLVFPTSKTAHRFQSTGIPPPIMGSLDSSDAGIVTVDVKTAENLLHSGYAFLDVRTVEEFKDGHVATEKIVNIPYLLNSPNGRVKNAQFLAEVSAVFKKDDRLVVGCRSGVRSLLAIDDLQNDGFKHLKDLGGGHLAWLENGLPVANPKGNRHTRHSQTFLRQPLVFPTSKPTHNLIVASSDSSNAGVVTVDVETAKKLLDSGYPLLDVRTVEEFRRGHVATEKIVNIPYLFSFEHGREKNDRFLEEVSAVFNKDDRFLVVCAIGIRSLEATQELQDNGFNKVKDQGGGFEAWVKNGFPATSKDLQGRSQCLCSARFVFHSSTSSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEMIGRKLKKNNVALDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKGAEQPSGSQDATMTERSGLATSDAENKAADLMDDENALLQQALAMSMDNPSATSDIRDIDMSEAASDDPELALALQLSVQEGSSDSTSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEEKKDEDKSSKEDEK 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33890388 33904884 + CaPI482276_01g020860.1 Cam01g2086 119168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2086 807 CDD VWA_26S_proteasome_subunit 405 592 - -
Cam01g2086 807 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 405 806 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008540(PANTHER)|GO:0031593(PANTHER)|GO:0043161(PANTHER)
Cam01g2086 807 MobiDBLite consensus disorder prediction 789 807 - -
Cam01g2086 807 Coils Coil 636 661 - -
Cam01g2086 807 Gene3D - 624 710 - -
Cam01g2086 807 FunFam 26S proteasome non-ATPase regulatory subunit 4 407 590 - -
Cam01g2086 807 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 728 747 IPR003903 -
Cam01g2086 807 SMART rhod_4 113 222 IPR001763 -
Cam01g2086 807 SMART rhod_4 269 377 IPR001763 -
Cam01g2086 807 MobiDBLite consensus disorder prediction 663 683 - -
Cam01g2086 807 ProSiteProfiles VWFA domain profile. 409 593 IPR002035 -
Cam01g2086 807 CDD PSMD4_RAZUL 750 796 IPR049590 -
Cam01g2086 807 ProSiteProfiles Rhodanese domain profile. 123 225 IPR001763 -
Cam01g2086 807 SUPERFAMILY vWA-like 408 579 IPR036465 -
Cam01g2086 807 MobiDBLite consensus disorder prediction 644 684 - -
Cam01g2086 807 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 261 379 IPR036873 -
Cam01g2086 807 SMART uim 696 715 IPR003903 -
Cam01g2086 807 SMART uim 728 747 IPR003903 -
Cam01g2086 807 SMART uim 626 645 IPR003903 -
Cam01g2086 807 Gene3D - 253 378 IPR036873 -
Cam01g2086 807 Gene3D - 105 224 IPR036873 -
Cam01g2086 807 ProSiteProfiles Rhodanese domain profile. 278 380 IPR001763 -
Cam01g2086 807 MobiDBLite consensus disorder prediction 769 807 - -
Cam01g2086 807 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 111 223 IPR036873 -
Cam01g2086 807 CDD RHOD 119 216 - -
Cam01g2086 807 FunFam 26S proteasome regulatory subunit N10 624 710 - -
Cam01g2086 807 Pfam Rhodanese-like domain 118 218 IPR001763 -
Cam01g2086 807 Pfam Rhodanese-like domain 272 373 IPR001763 -
Cam01g2086 807 Pfam Ubiquitin interaction motif 628 641 IPR003903 -
Cam01g2086 807 Pfam Ubiquitin interaction motif 696 709 IPR003903 -
Cam01g2086 807 Pfam Ubiquitin interaction motif 728 743 IPR003903 -
Cam01g2086 807 Gene3D von Willebrand factor, type A domain 407 590 IPR036465 -
Cam01g2086 807 CDD RHOD 272 372 - -
Cam01g2086 807 SMART VWA_4 406 579 IPR002035 -
Cam01g2086 807 MobiDBLite consensus disorder prediction 644 662 - -
Cam01g2086 807 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 626 645 IPR003903 -
Cam01g2086 807 Pfam von Willebrand factor type A domain 410 519 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2086 K03029 - - csv:101221273 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1233 Cam-Chr2:24474096 Cam01g2086 Cam-Chr1:33890388 8.40E-29 transposed
Cam01g2086 Cam-Chr1:33890388 Cam10g0066 Cam-Chr10:2239759 2.80E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1130 . . . . . . . . . . Cma03g00677 . Car03g00625 . Sed10g1012 . . Bhi03g00847 Tan03g2093 Cmetu04g2856 . Hepe04g1602 . . Cla01g01988 Cam01g2086 Cec04g1743 Cco04g1808 . Cmu01g1980 Cre04g1657 . . . . . . . Cme08g00942 . . . . . Bpe06g00334 . . . . . . . . . . . Bhi10g02362 . . . . . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 . Csa06g03340 . Cme11g00109
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58