Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2091 ATGTTAATGGTTCCGGACGAGACTCGGTCGGCTCATATTGGTTCACACCCCGCCACCGGCGGTCGGGTTCCGATTTCAATGGCGCCTCCCAAAGTCGATGCTGCGTACCTCAAGGAAATCGAGAAGGCCCGTAGAGACCTTCGCGCTCTAATCTTCAAGGAGAAATGCGCTCCTATTATGCTCCGATTAGCGTGGCATGATGCTGGTACTTACGACGCTGAAACGAAAACCGGCGGTCCTGATGGCTCCATCAGATTCATGGATGAATTGAACCATACTGCAAACAAGGGACTCAAAATCGCAGTTGATTTCTGTGAAACTGTGAAGGCCAGACATCCAAAAATCACATATGCAGATCTGTACCAGCTTGCTGGAGTTGTTGCTGTGGAGATAACTGGCGGGCCATCCATTGACTTTGTCCCCGGAAGAAAGGACGCAAATGTCGTGCCAGAAGAAGGCCGCCTGCCAGATGCCAACCAAGGTGCTTCCCATTTAAGAGATGTCTTTTACAGGATGGGACTGACTGACAAGGATATCGTGGCATTATCTGGGGGACACACATTGGGAAGAGCACACAAGGATAGATCAAATTTTGAAGGCCCATGGACAAAGGACCCTCTGAAGTTTGATAACTCCTACTTTGTGGAATTGCTGAAAAATGACTCTCGATCCAAGGAACAACTATTGAAGCTTCCTACAGACAAGGCCTTGGTTGAGGATCCTCGGTTTTCCCAATATGTAAAGGCATACGCAAAGGATGAAGACAAGTTTTTGGAGGATTATGCAGCATCTCACAAGAAACTGTCTGAGCTTGGCTTCACTAAACCTTCAACGGGTCTCAAGAGCAGCGCCTCCTCCTCATGGGCAAATAAAATTCTTGTAGCCGCAATCGTAGCTGTTGTGGCGATACTGAGTTACAAAAGAGCCATGTCGCCTGAGTGGGATGCCTTTCTTCCTACTCTCTTTTGA 969 48.3 MLMVPDETRSAHIGSHPATGGRVPISMAPPKVDAAYLKEIEKARRDLRALIFKEKCAPIMLRLAWHDAGTYDAETKTGGPDGSIRFMDELNHTANKGLKIAVDFCETVKARHPKITYADLYQLAGVVAVEITGGPSIDFVPGRKDANVVPEEGRLPDANQGASHLRDVFYRMGLTDKDIVALSGGHTLGRAHKDRSNFEGPWTKDPLKFDNSYFVELLKNDSRSKEQLLKLPTDKALVEDPRFSQYVKAYAKDEDKFLEDYAASHKKLSELGFTKPSTGLKSSASSSWANKILVAAIVAVVAILSYKRAMSPEWDAFLPTLF 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33929674 33933989 - CaPI482276_01g020910.1 Cam01g2091 119173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2091 322 Pfam Peroxidase 44 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Cam01g2091 322 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Haem peroxidase superfamily signature 202 217 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 Gene3D - 43 272 - -
Cam01g2091 322 Gene3D Peroxidase, domain 2 156 265 - -
Cam01g2091 322 FunFam Cytosolic ascorbate peroxidase 43 160 - -
Cam01g2091 322 ProSiteProfiles Plant heme peroxidase family profile. 115 279 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 178 188 IPR019793 -
Cam01g2091 322 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 31 281 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 133 145 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 57 72 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 172 193 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 249 273 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 114 132 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 75 85 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 154 171 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 194 218 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 36 56 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 PRINTS Plant ascorbate peroxidase signature 89 113 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 MobiDBLite consensus disorder prediction 1 24 - -
Cam01g2091 322 SUPERFAMILY Heme-dependent peroxidases 30 276 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g2091 322 CDD ascorbate_peroxidase 30 276 - -
Cam01g2091 322 FunFam L-ascorbate peroxidase, cytosolic 156 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2091 K00434 - - csv:101220337 475.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2091 Cam-Chr1:33929674 Cam03g0204 Cam-Chr3:3016901 5.60E-86 dispersed
Cam02g0442 Cam-Chr2:5122350 Cam01g2091 Cam-Chr1:33929674 4.70E-109 transposed
Cam02g2145 Cam-Chr2:34207264 Cam01g2091 Cam-Chr1:33929674 1.90E-81 transposed
Cam08g1017 Cam-Chr8:16388032 Cam01g2091 Cam-Chr1:33929674 2.90E-59 transposed
Cam08g1797 Cam-Chr8:24130093 Cam01g2091 Cam-Chr1:33929674 6.80E-34 transposed
Cam11g1451 Cam-Chr11:27228814 Cam01g2091 Cam-Chr1:33929674 5.40E-10 transposed
Cam01g2091 Cam-Chr1:33929674 Cam08g1884 Cam-Chr8:24838016 2.70E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1143 . . . Bda10g00192 . . . . . . . . . . Sed14g1205 . Cpe10g00676 Bhi03g00841 Tan03g2100 Cmetu04g0811 . Hepe04g1608 . . Cla01g01992 Cam01g2091 Cec04g1748 Cco04g1813 Clacu01g2109 Cmu01g1985 Cre04g1662 . . . . . . . Cme08g00948 . . . . Bpe10g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03346 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63