Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2093 ATGGGTTTCTTGGATTGTTGCGCCGACGTCTGCAACTTCTCTCACGGTCACAGCCACGACAGTAAAAAGCTCAAGAAAAACCAGCAACTTCAGAGGGTAGAGATTAAAGTGAAGATGGACTGCGAGGGGTGCGAAAAGAAGGTGAAGAAATCGGTGGAGGGAATGAAAGGGGTGACGGAGGTCGAGGTGGACCCCAAGCGGAGCAAGCTCTCGGTGGTGGGTTACGTGGATCCCGACAAGGTTCTGCACCGGGTCCGGCATCGGACCGGCAAGACGGCGGAGCTCTGGCCGTATGTCCCGTACGACGTCGTTGAACACCCATACGCGCCTGGAGCCTACGACAAGAAGGCGCCACCTGGGTACGTGCGGAATGTCGCGGCCAACCCCGAGGTGGCGCCGCTTGCACGTGCCGGATCCTTCGAGCCCAAGGTGTTGTCGTTAGCTTCGTGGCGACGCCATTCTCCGAATCTCCCCTATAAAAACTCCCCGCCTTCTTCTCAAACCCGCGAAATTCGCTCGATTCTTTCTCGGAGGATGACGAAGAAGGAGAACAATCTGGTTTTACTATCGTCGGATGAAGAATACTGTGGTGGTCAATCATCCAGTTCAAAACGCAGATATCGAAAGACGAAGTCGCAACCACCATTACCTCGGAAGAGCATTCGCCAAGCGAAGAAGGCTCGAGTCCTAGGTTCTCGGTCTTGCTTGCAGAAGGACTCCCGCAATGTTGACGAGTTCAACTTATTTTGTGAAGATTTTGATCAAGTCTTTTCTACCTTCAAGGTATCTGCTGGTTCTGGAAGCATTTGCAGAAATGAATTATGGATTGATAAATACAGACCACATTCATTGGAAGAGCTTGCTGTACACAAAAAGAAGGTAGAAGAAGTTAAGGTATGGTTTGAAGAAAGGTTGAGGAGACCGAAGGATGCTAGTGGAAATAATGTTCTTGTCATCACTGGTCCTGCTGGAGTTGGGAAATCTGCAACCATTAATGCAATAGCATCTCATCTTGGAGCCAGATTATGTGAATGGGACACACCTACTCCTGTGATTTGGCAAGAACATCTGCATAACTCGAGTGCTGGGATACAGTACACATCTAAACTGGATGAGTTTGAAAATTTTATTGGGAGAATGAGGAAGTATGGAGTAATACCTTCATGCTTTCCTGTAGACTCAAGACAACCGGTCATACTCTTAATAGATGATCTTCCTTTGACCAGTGGGAAGGCTGCTCTTAGAAGACTTCAGAACTGTTTGCATCTTTATGTTCAGTCAACTCAAGTTCCAACAGCCATTGTGATTACAGATTGTGCCAGAGCCGAAACAACAGACCTCACTGTGCGGTACTTGGAAGAGCTTCAGCTCTGTCTAGAGAATGCTGGGGCTTGTAAGGTTGCATTCAATCCTATAACGAATAACTCCATTAAAAAGATAATATCTAGAATATGTTCTCAAGAGCAGTACAATCTGGCAGTTGGACAAATTGATGCAATAGCCAAATCGAGTGGTGGTGATTTGAGGCATGCAATCATGTCTTTACAATTATTTTGCCTGAAACCAAGTCAGACATGTTCATCATCATTCAGTGCTCCAGAATCTTCAAAAGATGAAGAGCTCCCTCCTACAGTGGCGGATGATCGATTCTCTTTTCAATTTGGCCGTGATGAGACTCTCTCATTATTTCATGCCCTGGGAAAATTTCTACACAACAAACGACAGAGTAGAAACGAATTGCTATCAGACAGTGAGTTTTCCGTTCAAGAAAGTTTATTAAGACGGCCACTTAATATGGATCCTCCCGAAAAGATTCTATGTCAAGCACATGGGCAAGCCAGGCCTATTGCTGATTTTCTTCATGAAAATGTTCTTGACTTCATGAATGAGGAAGCTGTAGATGATGCATGCGTTGTGGCTTCGTATTTAGGTGATGCTGACACACTCCTTTCTTCTTACGAGGGAATGCTAGCCAGACATAATGATGCAGAAAATATTCTACACCTGGCTGCCGCTTCAGTTGCGGTCCGTGGGGTATTATTTGGCAATTCTCATCCATTGTCTTCCAGGTGGCATGCTATTCGTAGACCCAAGCTTTGGCAAATCGAGGGATCCTCATTGTTCAATAAGAAGGAGATGGTAAAACAAAGATTTATCGCTTATGGTGGGATCAGTTTAGCTCATTTTTCAGTAATTGCCACCGAGTACGTACCTGCATTGAAGTGGCTTGGTAGTAGTGTATCCGGAGATCATGAAAATTTGCGGATGTTGACAGAAGAAAATACAGACTTTGATTTAGTGAATTCAGGAGATCAAGAAAGTCATACTTCTGACGAAGAAATTGAAGATTGGTAA 2355 45.35 MGFLDCCADVCNFSHGHSHDSKKLKKNQQLQRVEIKVKMDCEGCEKKVKKSVEGMKGVTEVEVDPKRSKLSVVGYVDPDKVLHRVRHRTGKTAELWPYVPYDVVEHPYAPGAYDKKAPPGYVRNVAANPEVAPLARAGSFEPKVLSLASWRRHSPNLPYKNSPPSSQTREIRSILSRRMTKKENNLVLLSSDEEYCGGQSSSSKRRYRKTKSQPPLPRKSIRQAKKARVLGSRSCLQKDSRNVDEFNLFCEDFDQVFSTFKVSAGSGSICRNELWIDKYRPHSLEELAVHKKKVEEVKVWFEERLRRPKDASGNNVLVITGPAGVGKSATINAIASHLGARLCEWDTPTPVIWQEHLHNSSAGIQYTSKLDEFENFIGRMRKYGVIPSCFPVDSRQPVILLIDDLPLTSGKAALRRLQNCLHLYVQSTQVPTAIVITDCARAETTDLTVRYLEELQLCLENAGACKVAFNPITNNSIKKIISRICSQEQYNLAVGQIDAIAKSSGGDLRHAIMSLQLFCLKPSQTCSSSFSAPESSKDEELPPTVADDRFSFQFGRDETLSLFHALGKFLHNKRQSRNELLSDSEFSVQESLLRRPLNMDPPEKILCQAHGQARPIADFLHENVLDFMNEEAVDDACVVASYLGDADTLLSSYEGMLARHNDAENILHLAAASVAVRGVLFGNSHPLSSRWHAIRRPKLWQIEGSSLFNKKEMVKQRFIAYGGISLAHFSVIATEYVPALKWLGSSVSGDHENLRMLTEENTDFDLVNSGDQESHTSDEEIEDW 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33940782 33948641 - CaPI482276_01g020930.1 Cam01g2093 119175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2093 784 SUPERFAMILY HMA, heavy metal-associated domain 31 97 IPR036163 GO:0046872(InterPro)
Cam01g2093 784 Pfam Heavy-metal-associated domain 36 86 IPR006121 GO:0046872(InterPro)
Cam01g2093 784 MobiDBLite consensus disorder prediction 204 223 - -
Cam01g2093 784 Gene3D - 27 94 - -
Cam01g2093 784 Pfam Rad17 P-loop domain 271 443 - -
Cam01g2093 784 ProSiteProfiles Heavy-metal-associated domain profile. 30 93 IPR006121 GO:0046872(InterPro)
Cam01g2093 784 MobiDBLite consensus disorder prediction 194 223 - -
Cam01g2093 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 520 IPR027417 -
Cam01g2093 784 Gene3D - 473 535 - -
Cam01g2093 784 FunFam RAD17 checkpoint clamp loader component 272 452 - -
Cam01g2093 784 CDD HMA 34 94 IPR006121 GO:0046872(InterPro)
Cam01g2093 784 SMART AAA_5 313 473 IPR003593 GO:0016887(InterPro)
Cam01g2093 784 Gene3D - 272 453 IPR027417 -
Cam01g2093 784 CDD HLD_clamp_RFC 472 516 IPR047854 -
Cam01g2093 784 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 15 753 IPR004582 GO:0000077(PANTHER)|GO:0003682(PANTHER)|GO:0003689(PANTHER)|GO:0006281(PANTHER)|GO:0006281(InterPro)|GO:0033314(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2093 K06662 - - csv:101219861 1075.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2093 Cam-Chr1:33940782 Cam02g0435 Cam-Chr2:5079461 6.00E-41 dispersed
Cam01g2093 Cam-Chr1:33940782 Cam03g0660 Cam-Chr3:7457066 7.70E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1159 . . . . . . . . . . . Cma07g00412 . Car07g00362 . Cpe19g00872 . . . . . . . . Cla01g01995 Cam01g2093 Cec04g1751 Cco04g1816 Clacu01g2111 Cmu01g1988 Cre04g1664 . . . . Lsi01g00581 . . Cme08g00951 . . . . . . . . . . Cmo07g00407 . . . . . . . . . . . . . . . . . . . . . Csa06g03349 Chy02g00552 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009016 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34