Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2107 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGGTGCCGTCCTCGGACAGTATCGTACACAGTGGTTCAGATTCAGCAGGCCGTCATGAAGGCTTGCTATGGTACAAGGATATTGGACAGCACATGAATGGGGAATTTTCAATGGCTGTAGTCCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTTCATTGAGCTTGCTCGACTCCGGGCCATATGGTACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGAGAATCTTTTCCAGCATCTAAAAAGGTTTGCCTCAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAAGAAGGATTCATTTCTTTAGTGACTAAACAGTGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGTTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCTGTGCTCGGAAGGCTCGTGCGATCAACTGAGGAGGTTATTGCCGTGCAGCTATCAGCAGAGCATAATGTCAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGACTCACATATAGTAGTTTTGAAGCATAATGTGTGGCGAGTAAAGGGCTTGATACAGGTTTCCAGATCTATCGGTGATGCATATCTAAAGAGGGCGGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCGTTCACTCGACCAATATTGAGCTGTGAACCATCAATTTCAGTGTATGAGCTTCAACCACATGATCAATTCATCATATTCGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAACAGGCTGTCGATATTATTCAAAATCACCCGCATAATGGAAGTGCTAAGAGGCTGGTAAAAGCTGCTATGCTAGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGAAGGATATTGATCGTGGAGTACGCCGCCACTTTCATGATGACATCACTGTCATAGTTGTATTTCTTGACTCGAATCTTGTAAGTAGAGCGAGCTCGGTCCAAGGCCCAACCACGTCTTTGAGAGGGTGTGGCGTTATCTTACCTACAAAATCTCTAGCTCGTTGTGCCACACCTACAGAACTTAACACAGGCTGA 1194 45.39 MLSSLMNFLRACWVPSSDSIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFIGVYDGHGGPEASNYVYENLFQHLKRFASEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLVRSTEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNREPLYAKFRLREPFTRPILSCEPSISVYELQPHDQFIIFASDGLWEHISNQQAVDIIQNHPHNGSAKRLVKAAMLEAAKKREMRYSDLKDIDRGVRRHFHDDITVIVVFLDSNLVSRASSVQGPTTSLRGCGVILPTKSLARCATPTELNTG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34044203 34046154 + CaPI482276_01g021070.1 Cam01g2107 119189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2107 397 SMART PP2C_4 41 353 IPR001932 -
Cam01g2107 397 Gene3D - 37 366 IPR036457 -
Cam01g2107 397 CDD PP2Cc 48 355 IPR001932 -
Cam01g2107 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Cam01g2107 397 Pfam Protein phosphatase 2C 80 322 IPR001932 -
Cam01g2107 397 FunFam Phosphatase 2C family protein 36 365 - -
Cam01g2107 397 PANTHER PROTEIN PHOSPHATASE 41 354 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam01g2107 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Cam01g2107 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2107 Cam-Chr1:34044203 Cam02g0416 Cam-Chr2:4896996 5.40E-163 dispersed
Cam06g0445 Cam-Chr6:6588004 Cam01g2107 Cam-Chr1:34044203 3.20E-117 transposed
Cam10g1717 Cam-Chr10:31207299 Cam01g2107 Cam-Chr1:34044203 4.10E-118 transposed
Cam01g2107 Cam-Chr1:34044203 Cam10g0048 Cam-Chr10:2101953 3.50E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2107 K01102 - csv:101219696 754.207