Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g2159 | ATGAAATGGCGAAATGTGAGTGATGGAGAAGAGATTGAGATCTGGGTAAATGACATGTTTCAACAACAGAGTGCTCATAATTCAAGCTTTCTTCAAAACAACTTATTAGTTCGTGATAAGCATATACCTTCTGATGCCTGCTTGATGGATCCCGCGAAGGGAAATAATAGTACCAGCAACAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGGTTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGACAAGAAGGATTCTAATGATATTCTATCAAACATTGATGGCTCGTCAGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGAGTTCTTTCAGGAGCTCCGGTTGCATCTGCCTTTTCAGCTCCTGCTTCTGGTGATAACTGCCCAGAAGCTGATAAAAATGACCCTCCAACACCTGCACCCACATCTGAGTTTCCTCGCCAAGAGAAACCATCAAAGGAACATGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCATCACGAACCGTTGACGCCAGATTCTGGTTGCCATAGCTCCCGGAGTGAGAGTCCAAGGCCAGTGAAGAAGCAAAGACAGTACAGGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGAATCACGCTCTGTTTTTCCAGCCAGGGAAAAGTTCGATCCTTCATCTGGAATATCAATAGGGGACGACAACCAGTTAGACTAA | 1035 | 44.35 | MKWRNVSDGEEIEIWVNDMFQQQSAHNSSFLQNNLLVRDKHIPSDACLMDPAKGNNSTSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSNDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASAFSAPASGDNCPEADKNDPPTPAPTSEFPRQEKPSKEHAQAKSVSIDDSFSSHHEPLTPDSGCHSSRSESPRPVKKQRQYRDGAFAKSEMILAHQILESSLNSTHKESRSVFPAREKFDPSSGISIGDDNQLD | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 34337743 | 34341273 | - | CaPI482276_01g021590.1 | Cam01g2159 | 119241 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g2159 | 344 | MobiDBLite | consensus disorder prediction | 310 | 344 | - | - | |
Cam01g2159 | 344 | MobiDBLite | consensus disorder prediction | 280 | 294 | - | - | |
Cam01g2159 | 344 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 67 | 122 | IPR006447 | GO:0003677(InterPro) | |
Cam01g2159 | 344 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 64 | 124 | IPR017930 | - | |
Cam01g2159 | 344 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 51 | 315 | IPR046955 | GO:0003700(InterPro) | |
Cam01g2159 | 344 | Pfam | MYB-CC type transfactor, LHEQLE motif | 153 | 199 | IPR025756 | - | |
Cam01g2159 | 344 | MobiDBLite | consensus disorder prediction | 127 | 149 | - | - | |
Cam01g2159 | 344 | MobiDBLite | consensus disorder prediction | 255 | 279 | - | - | |
Cam01g2159 | 344 | Pfam | Myb-like DNA-binding domain | 69 | 120 | IPR001005 | - | |
Cam01g2159 | 344 | Gene3D | - | 66 | 125 | - | - | |
Cam01g2159 | 344 | MobiDBLite | consensus disorder prediction | 214 | 297 | - | - | |
Cam01g2159 | 344 | SUPERFAMILY | Homeodomain-like | 66 | 121 | IPR009057 | - | |
Cam01g2159 | 344 | FunFam | Myb family transcription factor | 66 | 124 | - | - | |
Cam01g2159 | 344 | MobiDBLite | consensus disorder prediction | 127 | 143 | - | - | |
Cam01g2159 | 344 | Coils | Coil | 156 | 176 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g2159 | Cam-Chr1:34337743 | Cam07g0128 | Cam-Chr7:2465804 | 1.40E-29 | dispersed | |
Cam01g2159 | Cam-Chr1:34337743 | Cam01g2160 | Cam-Chr1:34344618 | 6.80E-21 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51345 | PF00249 | Myb_DNA-binding | 1.30E-07 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g2159 | - | - | - | 0.0 |