Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2160 ATGTTTCCCAGACTCGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCCGACCTAACCCACAGTCATCGAGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGCTGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATCTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACGAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTTCAAAGTAAATTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGCGCAGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACAGGATCGTAAGAGCCCAAGAGGTTCCTCCATTGACCCACTTGGTTTCTATGCTTCCCAATCGCAAGAGATGGAAAGAGTGAATGGCACGGAAGAAGTGCAGGCTAATCTCCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCCAATGAGAGTCCCGGAGGATTGGCTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCTAAGGAAAGAATACAAGATGCTAACATCATCCAAGTTAACCATCACGGCGTATCTGGATGCGACATGTGGGGATGA 942 47.24 MFPRLVNPDGDIQIHGPRGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGQDRKSPRGSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34344618 34349470 - CaPI482276_01g021600.1 Cam01g2160 119242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2160 313 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Cam01g2160 313 MobiDBLite consensus disorder prediction 1 26 - -
Cam01g2160 313 Gene3D - 41 99 - -
Cam01g2160 313 MobiDBLite consensus disorder prediction 191 216 - -
Cam01g2160 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cam01g2160 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Cam01g2160 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 291 IPR046955 GO:0003700(InterPro)
Cam01g2160 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Cam01g2160 313 FunFam Myb family transcription factor 41 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2160 Cam-Chr1:34344618 Cam05g0378 Cam-Chr5:3480599 9.50E-46 dispersed
Cam01g2159 Cam-Chr1:34337743 Cam01g2160 Cam-Chr1:34344618 6.80E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51346 PF00249 Myb_DNA-binding 8.40E-06 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2160 - - - 0.0