Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2160 ATGTTTCCCAGACTCGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCCGACCTAACCCACAGTCATCGAGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGCTGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATCTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACGAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTTCAAAGTAAATTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGCGCAGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACAGGATCGTAAGAGCCCAAGAGGTTCCTCCATTGACCCACTTGGTTTCTATGCTTCCCAATCGCAAGAGATGGAAAGAGTGAATGGCACGGAAGAAGTGCAGGCTAATCTCCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCCAATGAGAGTCCCGGAGGATTGGCTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCTAAGGAAAGAATACAAGATGCTAACATCATCCAAGTTAACCATCACGGCGTATCTGGATGCGACATGTGGGGATGA 942 47.24 MFPRLVNPDGDIQIHGPRGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGQDRKSPRGSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34344618 34349470 - CaPI482276_01g021600.1 Cam01g2160 119242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2160 313 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Cam01g2160 313 MobiDBLite consensus disorder prediction 1 26 - -
Cam01g2160 313 Gene3D - 41 99 - -
Cam01g2160 313 MobiDBLite consensus disorder prediction 191 216 - -
Cam01g2160 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cam01g2160 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Cam01g2160 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 291 IPR046955 GO:0003700(InterPro)
Cam01g2160 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Cam01g2160 313 FunFam Myb family transcription factor 41 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2160 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2160 Cam-Chr1:34344618 Cam05g0378 Cam-Chr5:3480599 9.50E-46 dispersed
Cam01g2159 Cam-Chr1:34337743 Cam01g2160 Cam-Chr1:34344618 6.80E-21 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam05g1220 . 252 452 G2-like Transcription Factor Family AT5G16560 56.5 7.9e-45 178.3
Cam09g1148 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cam05g2142 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cam08g2020 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cam05g2500 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 2.4e-53 206.1
Cam08g0944 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.0e-52 201.4
Cam03g0128 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.4e-60 229.6
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.1e-74 275.0
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.8e-69 257.7
Cam05g0378 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.3e-65 246.1
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam11g0985 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 8.9e-50 194.5
Cam09g2321 . 1 391 G2-like Transcription Factor Family AT1G79430 53.4 1.0e-83 307.4
Cam02g1942 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cam05g0378 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cam01g2159 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.0e-56 216.1
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT3G10760 58.1 8.0e-83 304.3
Cam04g0579 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007112 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51346 PF00249 Myb_DNA-binding 8.40E-06 CL0123 Cam TF