Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2175 ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCAGCCACAAAAACCAGCTAATGGTGTAATGGCTAATGGAAAGGATACGGGGCTCTTGCCTCCGCAGATTTCGAAGTCAAGCAAACCTGCATCAGTTACTTCTGACCAGTCTAAATCAGTAAAGAATATCTCAAAGAAGGATATGGAAATATGTCCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAAATTTAATTTCAGCATATCCTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGATAAATGTTCACCTGGAAGCTCCCTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGCAAAGTAAGTGATGGGACTAGCTGTCTTGCCAAGACCAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTCGAGGGAGCACGAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCGATGGGATTAGGTCATTTTAGACTTTTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAGTTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACGGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGATTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCTCTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAATCCGACTCTTGTCAAAAATCTCTCTGCAGAGTCGGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGTAAGTCAAAGAAGGAACGAAAACCCAAAATTGATATGGGAAATCAGGTCAGCCCGTTGCCAGAGCTCATAGCAGAACCAACCGATGCCCGATCCATGTCTTTCGTAGGAACCCATGAGTACTTGGCACCTGAGATAATCAAGGGTGAAGGCCATGGAAGTGCTGTGGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTCAAGGGGTCGGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGAGGATTGCTAGTGAAGGAACCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATTAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCCACTCCTCCCGAAATCCCAAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTGGCGTCAACCAGTGAAAAGGCCGCAGCTATAGCAGCAGTTGCTGCAGATAAAAAAGCTTCCGATAATTATTTCGAATTTGATTTCTTTTAG 1839 43.72 MASIAGSKASSNQPQKPANGVMANGKDTGLLPPQISKSSKPASVTSDQSKSVKNISKKDMEICPDKKSPVSNQNGSAKLLTEKFNFSISSPGLKQTSTEVDSPHNEDKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAVAADKKASDNYFEFDFF 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34435293 34438660 + CaPI482276_01g021750.1 Cam01g2175 119257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2175 612 MobiDBLite consensus disorder prediction 1 19 - -
Cam01g2175 612 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Cam01g2175 612 MobiDBLite consensus disorder prediction 162 190 - -
Cam01g2175 612 FunFam Serine/threonine-protein kinase D6PK-like 215 300 - -
Cam01g2175 612 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Cam01g2175 612 SUPERFAMILY Protein kinase-like (PK-like) 192 580 IPR011009 -
Cam01g2175 612 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Cam01g2175 612 MobiDBLite consensus disorder prediction 115 140 - -
Cam01g2175 612 MobiDBLite consensus disorder prediction 1 76 - -
Cam01g2175 612 Gene3D Transferase(Phosphotransferase) domain 1 301 368 - -
Cam01g2175 612 MobiDBLite consensus disorder prediction 89 140 - -
Cam01g2175 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2175 612 CDD STKc_phototropin_like 216 577 - -
Cam01g2175 612 FunFam serine/threonine-protein kinase D6PK-like 301 368 - -
Cam01g2175 612 PANTHER FLIPPASE KINASE 1-RELATED 78 586 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam01g2175 612 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2175 612 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2175 612 MobiDBLite consensus disorder prediction 100 114 - -
Cam01g2175 612 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2175 612 MobiDBLite consensus disorder prediction 31 51 - -
Cam01g2175 612 SMART serkin_6 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2175 Cam-Chr1:34435293 Cam10g1296 Cam-Chr10:26438098 1.00E-184 dispersed
Cam04g0115 Cam-Chr4:3436219 Cam01g2175 Cam-Chr1:34435293 9.20E-151 transposed
Cam11g0261 Cam-Chr11:4118341 Cam01g2175 Cam-Chr1:34435293 7.00E-115 transposed
Cam01g1161 Cam-Chr1:18174418 Cam01g2175 Cam-Chr1:34435293 6.90E-226 wgd
Cam01g2175 Cam-Chr1:34435293 Cam02g0326 Cam-Chr2:3996590 4.40E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84908 PF00069 Pkinase 6.50E-38 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2175 K08286 - csv:101209748 1111.29