Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2193 ATGCAAGCATCCCAGAATCGGCAGGCTTCATCTGTGATCCATGAGATGTATCAACAGTCTGTGCAAGAGATGGATCCTTACTATTTATCTCATTTTCACGTATTGGGAAACCATGTCTCTCCTGACACAAGCAGCCAGGGAAACAGTGTTAACTTCTCTTCCTGTAAGGATCAGTTCTTTACTCTGGAATCATTCCCGGCTACTGCTGATCTGAGTGCCTGTAATTCACCTTCTGCTGTGAGTGTTCTGTCTTCCAGGAGCCCCTTCTCACCTCAAGGTTCTCAGTCATGCTCTTCAGATCAACACCATTCCTTTGACAACACATGCGGATCACCTCTAAGTGGATGCTCTGTAACTGATGACGATAACGAATTAAAGCACAAGCTGAAAGAATTAGAAATTTCTTTGCTGGGGCCTGAATCTGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGGTCATCGAGATGCTTCCATGGCAAGGCGGAACTGGAATCAAGTGGTTGAAATGATTCCTAGATTAAGTCTTCAAGACACGCTTATCCATTGTGCCCAAGCGATTCATGATTCCGATCTAAATGTGGCAACATTATTTTTGGATGTTTTAGGGCAGATGGTTTCTGTCTCTGGTGATCCAGCCCAGAGGTTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCGAGGTTGGAACGATCTGGAAGTGCAATATACAAGGCCTTAAAGTGTGAAGAGCCAACAAGCTCTGAACTAATGTCATATATGTCTATTCTATTCCAGATCTGCCCGTACTTCAAATTTGGTTACACTTCTGCGAATGCTGTCATTTGGGAGGCCATGGTAAATGAACCAATAATCCACATTATTGATTTTCAAATCGCACAGGGTAGTCAGTATATACCTCTCATCGATGATCTTGCCAATCGGCCTGGTGGACCCCCAGTTCTTCGCATTACAGGTGTGGACGATTCCCAATCAGCTCATGCTCGAGGAGGGGGACTACAAATTGTGGGACAGAAGTTAGCTCAGCTGGCTCAATCAAAAGGAATTCCCTTCCAATTTCATGCAGCTGCAATGTCTGGTTGTGAGGTCGAACGCAGTAATCTTAGAATACGACCCGGAGAAGCCTTGGCCGTAAATTTTCCATATGCCTTACACCACATGCCAGATGAGAGCGTGAGCACACAGAATCACCGAGACCGGCTTCTAAGGCTAGTTAAGAGTCTATCACCGAAAGTAGTAACCATTGTTGAGCAGGAATCCAACACCAACACATCCCCGTTCCTTCTTCGCTTTATAGAGACACTGGATTATTACACTGCTATGTTCGAGTCAATAGATGTAGCTCGTTCAAGAGACGACAAGCAGCGAATCAGGGCAGAGCAACACTGTGTCGCTCGAGACATAGTGAACATGGTAGCTTGTGAAGGGTTTGAAAGGGTAGAACGTCATGAACTCCTTGGCAAGTGGAGGATGAGAATGAGAATGGCTGGTTTCACTCCATATCCAATGAGCTCCTCTGTAACTGGAGCTGTCAAGAATATGTTGAGGGATTTCAACGAGAACTACAGACTCCAAGAAGTGGATGGCGCTATCTACCTCGGCTGGAAAAACAGAGCAATGGCAACCTCCTCTGCATGGAGATGA 1647 45.78 MQASQNRQASSVIHEMYQQSVQEMDPYYLSHFHVLGNHVSPDTSSQGNSVNFSSCKDQFFTLESFPATADLSACNSPSAVSVLSSRSPFSPQGSQSCSSDQHHSFDNTCGSPLSGCSVTDDDNELKHKLKELEISLLGPESDIVDSCYCSFRGGGHRDASMARRNWNQVVEMIPRLSLQDTLIHCAQAIHDSDLNVATLFLDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPTSSELMSYMSILFQICPYFKFGYTSANAVIWEAMVNEPIIHIIDFQIAQGSQYIPLIDDLANRPGGPPVLRITGVDDSQSAHARGGGLQIVGQKLAQLAQSKGIPFQFHAAAMSGCEVERSNLRIRPGEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELLGKWRMRMRMAGFTPYPMSSSVTGAVKNMLRDFNENYRLQEVDGAIYLGWKNRAMATSSAWR 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34530644 34532290 + CaPI482276_01g021930.1 Cam01g2193 119275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2193 548 ProSiteProfiles GRAS family profile. 169 548 IPR005202 -
Cam01g2193 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 150 547 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam01g2193 548 Pfam GRAS domain family 179 548 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2193 Cam-Chr1:34530644 Cam02g0884 Cam-Chr2:12088796 1.30E-159 dispersed
Cam01g2193 Cam-Chr1:34530644 Cam10g2080 Cam-Chr10:34543467 1.40E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51348 PF03514 GRAS 4.20E-127 CL0063 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2193 K27748 - csv:101207883 1000.35