Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g2212 | ATGGCGACCTCATGTTTCGGTTCACTTAGGATTCGTAAATCGAAGAGCAAACCCTTATCAACCCCTTCCTCGTTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCAATGATCCTAGAGTCTGAAAATGTGGAAACCTGGGAGACAGCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAACTCTTCATTGGTAACAAATTTGCCTCTGGTGCTCACAGTCGGATTTACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGAATTCCAAACCAAAAAGAGGAAACAAGAGCCAAACTCGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATATTGAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTCCATTCCCAAGGAGTAATCCACAGAGACCTCAAATCAAACAACTTGCTTCTAAATGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACATCCTGCCTCGAAACACAGTGCCGAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCTTATACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTTACCACGGCTCTGCTTCCGTTTCAAGGGATGACCCCCGTGCAAGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCACCATTACCGGCGAGTTGTCAGCCGGCACTAGCCCACCTGATAAAGCGGTGTTGGGCGGCGAATCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCTTTGGAGAAATACGATGAGTGTGTGAAAGAGGGTCTTCCCCTTGCACACCATAGGAGATTGGTAAACCGAAACGCCATTATCGAACGCTTGAAAGCTTGCGCTTCAACCAGTTCTTCAATCCCTGTACATGCCTAA | 1122 | 46.17 | MATSCFGSLRIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETAKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERLKACASTSSSIPVHA | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 34632598 | 34634007 | - | CaPI482276_01g022120.1 | Cam01g2212 | 119294 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g2212 | 373 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 55 | 331 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cam01g2212 | 373 | CDD | STKc_MAP3K-like | 83 | 327 | - | - | |
Cam01g2212 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 238 | 248 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam01g2212 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 154 | 167 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam01g2212 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 301 | 323 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam01g2212 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 192 | 210 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam01g2212 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 257 | 279 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam01g2212 | 373 | ProSiteProfiles | Protein kinase domain profile. | 76 | 349 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g2212 | 373 | SMART | serkin_6 | 76 | 337 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g2212 | 373 | SUPERFAMILY | Protein kinase-like (PK-like) | 52 | 327 | IPR011009 | - | |
Cam01g2212 | 373 | FunFam | Serine/threonine-protein kinase isoform 1 | 66 | 158 | - | - | |
Cam01g2212 | 373 | MobiDBLite | consensus disorder prediction | 14 | 31 | - | - | |
Cam01g2212 | 373 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 198 | 210 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam01g2212 | 373 | Pfam | Protein tyrosine and serine/threonine kinase | 79 | 329 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam01g2212 | 373 | FunFam | serine/threonine-protein kinase HT1 | 159 | 352 | - | - | |
Cam01g2212 | 373 | Gene3D | Transferase(Phosphotransferase) domain 1 | 159 | 354 | - | - | |
Cam01g2212 | 373 | Gene3D | Phosphorylase Kinase; domain 1 | 65 | 158 | - | - | |
Cam01g2212 | 373 | MobiDBLite | consensus disorder prediction | 13 | 32 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1435 | Cam-Chr1:27902183 | Cam01g2212 | Cam-Chr1:34632598 | 4.40E-112 | dispersed | |
Cam01g2212 | Cam-Chr1:34632598 | Cam01g2365 | Cam-Chr1:35676938 | 9.70E-90 | dispersed | |
Cam02g2004 | Cam-Chr2:33075358 | Cam01g2212 | Cam-Chr1:34632598 | 7.60E-20 | transposed | |
Cam08g1128 | Cam-Chr8:17610207 | Cam01g2212 | Cam-Chr1:34632598 | 1.30E-62 | transposed | |
Cam10g0041 | Cam-Chr10:2046164 | Cam01g2212 | Cam-Chr1:34632598 | 3.20E-69 | transposed | |
Cam02g0405 | Cam-Chr2:4785782 | Cam01g2212 | Cam-Chr1:34632598 | 1.80E-66 | transposed | |
Cam01g2212 | Cam-Chr1:34632598 | Cam03g0428 | Cam-Chr3:5292833 | 1.60E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84909 | PF07714 | PK_Tyr_Ser-Thr | 5.30E-68 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g2212 | - | - | - | 0.0 |