Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2231 ATGGCTTTCCCATTATTATTCCTCTTTTTCTTACCTACAATTATCTCCACTCCCAACCCCAACAACTATTATAGCGAACCAGCCCTCAACCCCATCGACGCATGCTGGCGGAGCAATCCCAATTGGGCAGCCAACCGCCAAGCCTTGGCGGACTGCGCCGTCGGGTTCGGCAGCGACGCCACGGGAGGCAAATTCGGGTCAATCTACGTGGTCACAGACCCATCGGACGACCCGGAATATCCGGAACCCGGAACGCTGCGTTTTGGGGTTATTCAAACGGAGCCGTTATGGATTGTATTCGCAACAGATATGGCGATTACCCTTAAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGGCGAGGGGCAAAAGTGGAAATTAGTAATGGGCCATGTATTACTATCCAAAACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCTGGGCGCGTGAGAAGCACCGTCACTCACTGTGGGGACCGCCGCGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAATTACCTCACTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGAGTTTACAGATGATAGAATCATGAAAGTGACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCAAGGGTAAGATTTGGGTATGCTCATGTTGCTAATAATTGGTACAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCCGATGACTCATTGTCAAAACAAGTTACAAAGAGAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTGTCCCATCTGGGTGGGGATCTTGTAAGCCTTTCTACACTCAAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCGCCTCTTTTGACTGAAACTGCTGGCACTTTGAGTTGTGTTCTTGGTAAACCTTGTTGA 1134 47.8 MAFPLLFLFFLPTIISTPNPNNYYSEPALNPIDACWRSNPNWAANRQALADCAVGFGSDATGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQTEPLWIVFATDMAITLKRELMVNSFKTIDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRRESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYLTQHDKVILLGHNDEFTDDRIMKVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDSLSKQVTKREVYANGWKKWKWRSSNDVFLNGAYFVPSGWGSCKPFYTQAQAFAVAHGSLAPLLTETAGTLSCVLGKPC 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34780681 34783701 + CaPI482276_01g022310.1 Cam01g2231 119313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2231 377 Gene3D - 29 370 IPR012334 -
Cam01g2231 377 PANTHER PECTATE LYASE 18-RELATED 19 373 IPR045032 GO:0030570(InterPro)
Cam01g2231 377 Pfam Pectate lyase 110 294 IPR002022 -
Cam01g2231 377 SUPERFAMILY Pectin lyase-like 30 368 IPR011050 -
Cam01g2231 377 SMART amb_all 103 300 IPR002022 -
Cam01g2231 377 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Cam01g2231 377 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Cam01g2231 377 PRINTS Pollen allergen Amb family signature 348 371 IPR018082 -
Cam01g2231 377 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Cam01g2231 377 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Cam01g2231 377 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Cam01g2231 377 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Cam01g2231 377 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2231 Cam-Chr1:34780681 Cam03g0333 Cam-Chr3:4514431 8.00E-124 dispersed
Cam01g2231 Cam-Chr1:34780681 Cam03g0451 Cam-Chr3:5529484 2.20E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2231 K01728 - csv:101210816 709.909