Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2233 ATGGACAAAGGATGGGGTCTAACCCTCCGTGATTCTGATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCACCACCGCCGACCACTGTCAATTCCTTTCAAAGAATGTTTCAAGGTTTAGAATTCCCCGGAAAACTTGGCCGGACTGACGACACCGACGCCACTCCGTCTCTAGCCGACGAGAATCGGCTGGCCGTCAACGAGGTGGACTTTTTCTCCGATAAGAAAAGAGTGGTTGATGATCGGGAGGATCAAGACTCTAAACCTTCTACTAATATTATCCCCACCACCGCTATCAATAAAGACGATAAGCCTTTTACCGCTCCCAGAACTTCCTTCAATCTTGTTAACACTGGGTTGCATCTGTTAACTGCTAACACTGGAAGCGATCAATCAACGGTGGATGATGGAATTTCTTCAGATGGTGAAGATAAACGAGCCAAAAACGAGCTAGCGCAACTTCAAGTGGAGCTTCAGCGTATGAACGCTGAGAATCACAAGCTTAGAGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACAAATGCATCTCTTGACCTTAATGCAACAGCAACAACAAAATCAGGCTTCCGAACCCGCTCATGAAAGAGAGATTGGGGAGAAGAAATCGACGGAAATAAAACATGAAGTTGGAAGGGTAATGGTACCAAGACAATTTATGGATCTAGGACCAAGTGGGAACAACAACAACAACAACACTGGTGAAAGCGATGAACTATTATGTAATTCCTCGTCGGATGAAAGAACTCGTTCTGGGTCTCCATTGAACAACAACAATACCACCGAAACCGCCTCCAAAAAAAGAGATCACGCGGAAATCACGGCTCCTTCCGATCACGAAAATTCCAAAAGACCCAACCCCAGAGAAGAAAGCCCCGAATCAGAATCTCAAGGTTGGGGTGGTCCGAACCATAAGCCCCCTCGGTTCAACTCTTCTAAACCACTTGACCAATCAACCGAAGCCACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGATCCGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGAGCCTATTATCGCTGCACAATGGCCGTGGGTTGCCCAGTTCGCAAACAAGTCCAACGTTGTGCTGAAGATAGGAGTATATTGATAACAACTTACGAAGGTAACCACAACCATCCACTTCCGCCGGCAGCGATGGCCATGGCGTCAACTACGACGGCGGCGGCTACCATGTTGTTATCAGGGTCTATGTCAAGTGCAGACCATAATTTAATGAACCCAAATTTATTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACTCCAAACCCATTACAGTTTCAAAGACCCGCAGCGACGCCTTTCCACGTGCCATTCCCCGGCGGACAACCACCGTCGGCCGCCGTTGCCGCCCAGTTGCCTCAAGTTTTGGGGCAAGCGTTGTATAACAATCAATCAAAATTCTCGGGGCTACAGCTTTCTCATGAGATGGGGGCTAATTCCTCTCATTTGGGTCATCACCAAATTACACAACCGGCGACTCCGGCCCAGCCTGGTGGTGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATTACCGCCGATCCTAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCGAATAATAATAGCAATACAAATACCACCAATAATACTACAACAACAAACAACAACAACGGAAGCAGCAACAACAGCAAAATTAGCAGCTTCCCTGGAAATTAA 1872 47.92 MDKGWGLTLRDSDQSIGFFSNKPPPPPTTVNSFQRMFQGLEFPGKLGRTDDTDATPSLADENRLAVNEVDFFSDKKRVVDDREDQDSKPSTNIIPTTAINKDDKPFTAPRTSFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSSLQMHLLTLMQQQQQNQASEPAHEREIGEKKSTEIKHEVGRVMVPRQFMDLGPSGNNNNNNTGESDELLCNSSSDERTRSGSPLNNNNTTETASKKRDHAEITAPSDHENSKRPNPREESPESESQGWGGPNHKPPRFNSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAATPFHVPFPGGQPPSAAVAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSHLGHHQITQPATPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNSNTNTTNNTTTTNNNNGSSNNSKISSFPGN 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34801480 34803850 + CaPI482276_01g022330.1 Cam01g2233 119315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2233 623 MobiDBLite consensus disorder prediction 1 26 - -
Cam01g2233 623 MobiDBLite consensus disorder prediction 231 271 - -
Cam01g2233 623 Pfam WRKY DNA -binding domain 350 407 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2233 623 Coils Coil 144 178 - -
Cam01g2233 623 MobiDBLite consensus disorder prediction 272 300 - -
Cam01g2233 623 SMART WRKY_cls 348 408 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2233 623 Gene3D WRKY domain 333 410 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2233 623 MobiDBLite consensus disorder prediction 587 623 - -
Cam01g2233 623 MobiDBLite consensus disorder prediction 533 550 - -
Cam01g2233 623 MobiDBLite consensus disorder prediction 319 333 - -
Cam01g2233 623 MobiDBLite consensus disorder prediction 202 223 - -
Cam01g2233 623 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 133 592 IPR044810 GO:0003700(InterPro)
Cam01g2233 623 MobiDBLite consensus disorder prediction 191 338 - -
Cam01g2233 623 MobiDBLite consensus disorder prediction 533 554 - -
Cam01g2233 623 FunFam probable WRKY transcription factor 31 333 410 - -
Cam01g2233 623 SUPERFAMILY WRKY DNA-binding domain 341 409 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2233 623 ProSiteProfiles WRKY domain profile. 343 409 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2233 Cam-Chr1:34801480 Cam06g1779 Cam-Chr6:28949697 3.70E-41 dispersed
Cam01g2233 Cam-Chr1:34801480 Cam02g0217 Cam-Chr2:3103043 3.00E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51351 PF03106 WRKY 3.60E-24 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2233 - - - 0.0