Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2243 ATGGGGAAGAAGAAGCTGAGCCTGCAAAATCAAGGCTCTCATGTTATATTAGACAATGGATTGTTGAAGGTGACGATATCAAACCCACAAGGGTATGTAACTGGCATCATGTATGGGGGCATGGACAATCTGTTAGATGTAAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTCAAGGGATCTGAATTCAACGTCATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAGAGTTTTCAACCCGTCAACTCAAGGCAACAAACTCCCGCTTGCTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAAGGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTTTTTAAACTGCGACAAGAGAAGTTCCATTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGATGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCGAAATGGAGGTCCTACGAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATTAAGGAGGGAGAAACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAGTGCTAGAGGAAACAGCATGGCCGTACAATTTTGTCTCTTCATCTTTTTATTTCATGGCAAATGAACGTGGTTCCATTTCTGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATCCCTGCGAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAAAGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACTGTATCTGCAGGATCTCATACCCATCTTGGAATTCTGACCTATAGTCCTCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTATCCTGACCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGCTATTCCTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACACTGATTTATATCCAATAAATGACCAAGTTTTCACCGTGGGTATCAATGATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGCAGAGGAGGGGAAGATGGTAAGTATGTTGCGGCAACATGGACTATTAAGTTCAACATGACATCCTTAAGTGATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGGACTTGAAGATTAATGTCAACTCAATGGGGTCGGAGTCGACTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAATTCATGGACTGTATCGAATTTATAGTATCGACATTCCATCTTCACTGCTTGTTAAGGGCGATAACTCCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAGTTTTATACGATTACTTAAGATTGGAAGTTCCTGATACTCCATGA 1908 42.14 MGKKKLSLQNQGSHVILDNGLLKVTISNPQGYVTGIMYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRRVFNPSTQGNKLPLAVDIRYIMRTGIPGFYCYAIYEHPSEGRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRVLEETAWPYNFVSSSFYFMANERGSISGRLLVQDRFISSSPIPARDAHIGLSAAREEGAWQTESKEYQFWVKTDSKGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYSPLRDGPTLWEIGYPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYTDLYPINDQVFTVGINDPKKDWFFAQVCRGGEDGKYVAATWTIKFNMTSLSDGTYRLRLAIASATRSDLKINVNSMGSESTLVFQLMNLGMDNTVCRHGIHGLYRIYSIDIPSSLLVKGDNSIFLTQARNGDPLCGVLYDYLRLEVPDTP 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34859465 34863042 + CaPI482276_01g022430.1 Cam01g2243 119325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2243 635 CDD RGL4_C 443 630 - -
Cam01g2243 635 CDD RGL4_M 332 429 IPR029413 -
Cam01g2243 635 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Cam01g2243 635 SUPERFAMILY Starch-binding domain-like 327 430 IPR013784 GO:0030246(InterPro)
Cam01g2243 635 Gene3D - 439 629 - -
Cam01g2243 635 Gene3D - 6 303 IPR014718 GO:0030246(InterPro)
Cam01g2243 635 CDD RGL4_N 6 299 - -
Cam01g2243 635 Gene3D - 329 431 - -
Cam01g2243 635 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Cam01g2243 635 Pfam Polysaccharide lyase family 4, domain II 357 427 IPR029413 -
Cam01g2243 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 633 IPR051850 -
Cam01g2243 635 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cam01g2243 635 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2243 Cam-Chr1:34859465 Cam11g1493 Cam-Chr11:27738624 2.70E-201 dispersed
Cam01g2243 Cam-Chr1:34859465 Cam08g1611 Cam-Chr8:22282428 8.50E-203 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2243 K18195 - csv:101220336 1235.71