Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2268 ATGTTCGACCCAGATATGTTTGATACTCACCATCATATGCTTGAGGAGTTGGAAAGTATGAGAGATGATGATTTCGAGACCAAATCTGGCGCAGAAATCTTAGAACCTGCTTGTGGAACTGACCAACAACGCTCCAAGAAGAAACGTTACAATCGCCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTTAAGTTTTGGTTTCAAAACAAACGCACCCAGATGAAGGCTCAACATGAGAGACACGAAAACGCAATTTTGAAGGCAGAAAATGAGAAGCTTCGTGCTGAGAATATCCGTTATAGAGAAGCATTCGCCCATTCAACTTGCCCTAACTGCGGCTCTTCCTCCACTGCCCTCGGCGAAATGTCCTTTGACGACCAACATTTGCGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGGTCGAAATGCACAAAGCCGTACTATCAGCTTCCGACGAATGCTCCGACGCGATCTCTGGAGTTGGGCATCACAAATTTCGGTGCACAGTCGTCGGGATTCGTGGGAGAGATGTATGGAGCGGCGGACTTTTTGCGGTCGATATCGAGGCCTTCAGAAGGCGAGAAACCGGTGATCGTTGAGCTGGCGGTTTCGGGGATGGAGGAATTGAGGAGAATGGCTCAGGGCGGGGAGCCGTTGTGGGTTGCGGGTGATGGGAAGTCGTCGAGCGAAGTGGTTCTTAACGAAGCGGAGTATTTGAGCAGTTTCGGAGGCGGAATTGGGGGAAAGCCCATGGGCTTTAGAACTGAGGCTTCAAGAGTTTCGGCTATTGTGTTCATGAACCATATGAAGCTGGTGGATATTTTCATGGATGCTACGCAATGGTCAACCGTGTTCTGCGGCATTGTTTCCAGAGCATCCACTGTGGAAATCCTTTCGCCTGGCCTACCAGGAAACTTCAACGGGGCCTTGCATGTGATGAGCGCTGAATTCCAAGTCCCATCGCCCCTTGTTCCGACTCGTGAAAACTACTTCGTAAGATACTGCAAACAACAAAGCGATGGATTGTGGGCGGTGGCTGATGTTTCCTTAGACACCTTACGCCCTTCTCTCATCCCTAACACCCGAAGAAGACCCTCTGGTTGCTTAATTCAAGAATTGCCCAACGGCTATTCAAAGATCACTTGGGTCGAACATGTAGAGGTCGACGAAACTGGCGTCCCCACAATGTACAGACCCCTCGTTAACTCTGGCCTCGCTTTCGGGGCTAAGCGATGGGTCGCGGCCTTGGATCGCCAATCTGAGCGCTTCGCCACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTTATATCGAGTATTGAAGGCAGGAAGAGTATGCTGAAGCTAGCGGAGAGAATGGTGACGAGCTTCTGCGCCGGTGTCGGCGCGTCGAGTGTACACGCTTGGACGGCGTTACCTGCAGCTGCCGGCGATGAGGTTCGTGTTGTGACGAGGAAAAGCACCGACGAACCAGGGAGACCACCCGGCGTTGTACTGAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCTAAGGTCGTGTTTGATTTCCTCCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGATTAGTTCAGGAAATGGCTCACATAGCCAACGGCCGCCACTCCGGGAATTGTGTCTCCTTGCTTCGTGTCAACAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCGACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTTGCCATGAACGTGGTGCTAAGCGGTTGCGATCCGGATTACGTGGCACTTCTACCGTCGGGATTCGCCATACTTCCAGACGGACCCGGCGGAGGAGGCAACAACGGCGACGGAATTCTTGAGCTGGGATCCGGTGGGTCACTCATCACAGTTGCATTTCAAATCCTGGTTGATTCAGTTCCGACGGCTAGACTTTCAATTGGATCAGTGGCCACCGTGAACAGTCTGATCAAATGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGCGAAAACCCATGA 2157 51.69 MFDPDMFDTHHHMLEELESMRDDDFETKSGAEILEPACGTDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLELGITNFGAQSSGFVGEMYGAADFLRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSSEVVLNEAEYLSSFGGGIGGKPMGFRTEASRVSAIVFMNHMKLVDIFMDATQWSTVFCGIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQSDGLWAVADVSLDTLRPSLIPNTRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVAALDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGDGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34996730 35003409 - CaPI482276_01g022680.1 Cam01g2268 119350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2268 718 SUPERFAMILY Bet v1-like 478 710 - -
Cam01g2268 718 ProSiteProfiles START domain profile. 225 459 IPR002913 GO:0008289(InterPro)
Cam01g2268 718 Gene3D - 285 457 IPR023393 -
Cam01g2268 718 MobiDBLite consensus disorder prediction 29 54 - -
Cam01g2268 718 SMART START_1 234 456 IPR002913 GO:0008289(InterPro)
Cam01g2268 718 CDD START_ArGLABRA2_like 229 455 - -
Cam01g2268 718 Pfam START domain 236 455 IPR002913 GO:0008289(InterPro)
Cam01g2268 718 Coils Coil 98 130 - -
Cam01g2268 718 SMART HOX_1 45 108 IPR001356 GO:0003677(InterPro)
Cam01g2268 718 CDD homeodomain 46 105 IPR001356 GO:0003677(InterPro)
Cam01g2268 718 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677(InterPro)
Cam01g2268 718 Pfam Homeodomain 47 102 IPR001356 GO:0003677(InterPro)
Cam01g2268 718 Gene3D - 36 120 - -
Cam01g2268 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 713 IPR042160 -
Cam01g2268 718 FunFam Homeobox-leucine zipper protein HDG1 36 120 - -
Cam01g2268 718 SUPERFAMILY Bet v1-like 228 457 - -
Cam01g2268 718 FunFam Homeobox-leucine zipper protein GLABRA 2 234 455 - -
Cam01g2268 718 SUPERFAMILY Homeodomain-like 36 104 IPR009057 -
Cam01g2268 718 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2268 Cam-Chr1:34996730 Cam06g0223 Cam-Chr6:4022139 3.80E-191 dispersed
Cam01g2268 Cam-Chr1:34996730 Cam02g0971 Cam-Chr2:14250594 2.00E-264 wgd
Cam01g2268 Cam-Chr1:34996730 Cam02g0194 Cam-Chr2:2859260 3.60E-258 wgd
Cam01g2268 Cam-Chr1:34996730 Cam03g0488 Cam-Chr3:5826529 8.30E-255 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51353 PF01852 START 8.10E-47 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2268 K09338 - csv:101209093 1362.44