Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2270 ATGGCTACCGATCAGCCACTTCTTCTTCAACCCCCCAAAACTCCCCGATCCAAAACCTTCCCAACAATCCTCTGTTTGGCTGCTCTTTTGTGCTCAGCCATTTTCATTACCAACAAATTCATCAAATCAAACCCATCTGAAAATGATCTACCCTTCCTTCACAACATATGCCACAAGGCATACAACCCATCATCCTGCATTCAAATGGCCGCCTCAGAATCTCCCTTTCCTCAAGAAATCAAAACCACGAACGGGGCTCATTTCTTACATTCTTTCTTGAGGAAATCCATTCCCAAAGTAATTAACACAATCGAGAAAGCCAAAGATCTCAGCCAAAGAATCAACAACCCTCGCGGTGAAGCAGCTTTAGCCGATTGTGTCGAGCTTATGGAGATCTCAAACGGCCGACTCATGGACTCTGTTTTGGCTCTGAAGAACAGAACAAGCGGTTCTATCGAAAATGCCCACACATGGCTGAGTAGCGTGCTGACAAACCACATCACGTGCTGGGATGAGATCGAGAATTCAGTATCCAGAGCCGCGGCCATGGATTTAGGACTTGAAGAGTTGATTATGAGAGGGAGAAATTCGTTGGGGATGTTTGTTTCTATTTGGGGATCGGAAATTGGAAATCTGGGGGAGTTGGGGAAAAGGGAAAATGCGTATCCGAGTTGGTTGAAGAAAGGAGATCGGACATTGTTGGGGGTTTCGGGGAGAGAAATGCAAGCGAATATCGTGGTGGCAAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAAGCAGTGCCAGATAAGAGCAAGAACAGAGTTGTTATATATGTGAAGAAGGGGATATATAAGGAAAATGTGGAAGTGGGAAAGAAGAAAAAGAATGTAATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAACTCTGCAACTGTAGCTGCGGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGACCGGAAAAGCACCAAGCAGTCGCACTTCGGGTCGGAGCAGATCAATCCGTAATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACGCACATTCCAACCGTCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATATTCGGTAACGCCGCCGTCGTGTTACAGAACTGTAAAATTGAGCCCCGACGGCCGATGAGCAACCAAGCCAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGAAATGCCAAATTGTGGCAAGCTCCGACTTGGAGCCCGTTAAGGGGTCGATTAAGACGTATTTGGGGCGCCCATGGAAGGAGTTTTCGAGGACCGTCGTGATGCAGTCCAGAATTGGCGATCTTATTAATCCAGCGGGCTGGGCCGAGTGGAGTGGGGACTTTGCATTGAAGACGCTCTATTACGGGGAGTATTTAAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTACCATGTCATTACGAACCCATCTGAGGCCCAAAAATTCACGGTGGATTCACTTATACAAGGAGGCCAATGGCTGGGCCCCTCAGGCGCGACTTTTATCCCAGGGCTGTGA 1668 48.38 MATDQPLLLQPPKTPRSKTFPTILCLAALLCSAIFITNKFIKSNPSENDLPFLHNICHKAYNPSSCIQMAASESPFPQEIKTTNGAHFLHSFLRKSIPKVINTIEKAKDLSQRINNPRGEAALADCVELMEISNGRLMDSVLALKNRTSGSIENAHTWLSSVLTNHITCWDEIENSVSRAAAMDLGLEELIMRGRNSLGMFVSIWGSEIGNLGELGKRENAYPSWLKKGDRTLLGVSGREMQANIVVAKDGSGNFKTVKEAVEAVPDKSKNRVVIYVKKGIYKENVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGTSIQKCQIVASSDLEPVKGSIKTYLGRPWKEFSRTVVMQSRIGDLINPAGWAEWSGDFALKTLYYGEYLNNGPGSDVSKRVKWAGYHVITNPSEAQKFTVDSLIQGGQWLGPSGATFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35021190 35022945 - CaPI482276_01g022700.1 Cam01g2270 119352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2270 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 176 IPR035513 -
Cam01g2270 555 CDD PMEI-like_4 57 204 - -
Cam01g2270 555 PANTHER PECTINESTERASE 26 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam01g2270 555 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Cam01g2270 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Cam01g2270 555 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
Cam01g2270 555 NCBIfam pectinesterase inhibitor domain 24 173 IPR006501 GO:0004857(InterPro)
Cam01g2270 555 Pfam Plant invertase/pectin methylesterase inhibitor 52 176 IPR006501 GO:0004857(InterPro)
Cam01g2270 555 FunFam Pectinesterase 238 555 - -
Cam01g2270 555 Gene3D - 238 555 IPR012334 -
Cam01g2270 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 203 IPR035513 -
Cam01g2270 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cam01g2270 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2270 Cam-Chr1:35021190 Cam09g0554 Cam-Chr9:5538356 2.10E-120 dispersed
Cam01g2270 Cam-Chr1:35021190 Cam09g0139 Cam-Chr9:2188255 4.80E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2270 K01051 - csv:101216377 972.23