Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2283 ATGGGAAGGTTGAGTTTAGAAGCGCTTTTCTTCGTTCTCGCAGCCTCACAATTCATATTTCCCACAACTTCTCAGCCACCCTTCTTATATCGCATCTGTTCCGACAAAGCCAACTACACCGCCGGCAGTCCTTTCAAGAAAAATCTCCACAACGTACTTCTCTCCATCTCTTCCAACACCCAAATCGATTACGGTTTCTACAACGCCACCTCCGGCAAAGTTCCCAACACAGCCACCGCTTTGGCTCTTTGCCGTGGAGGCGCTCCGTTGGAACAATGTAGAAGCTGTGTGTATAACTCAACGCTCAGGATTACTCAAGATTGTCCAAACCAGAGAGAAGCAGAGGGATGGTACCAGGATTGTCAAATTCGTTACTCAAACAACACAATTTACGGCGTCGGAGACAACACTGTACAGATAATCTTCTGGAACTTTGCAAAAGCGGAAGACCCCGACGGGTTTAATGTGGCGGTGAGGAATTTGTTCGATCGGCTGCGAGTGGAGGCTGCGTCGGGGAGTTCTATTAAGAAATCGGCTTGGGGAGGGGAGAAGATTCCAAGTCCGAGCATGGATACTGTATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTACTTGGATTGTTTAAGCTGCCTCAATCAGCTTCAAACAACTCTTCCTAATTGTTGTAATGCGAGCATAGGGGTGAGATTAATTGCAACTAGTTGTCAACTCAATTACGAGCTCCACCCCATTTATCCTCCGCTTTCGTCTCCGCCTCCACCTCCGCCTCCTCCGCTTCTGTCTCCTCATTCTCCTCCTCCTCTGCCCTCACCCTTGTCATCTTCGCCTTCAAAACCTGGAAATAACGGCAATATTGGTAGAACTAGAACTGTTGTAATCATTGTGGTGACCACCGTTTCTGCTGTCATTCTTCTTGGCATTTTTGTTATTTTGATATTGAGGAAGCAAAATCACAAAACATCATTAGACAATTCCGTAGATTTGTCTTTCGGAGACACCACGGTTGAAATTAGCAGTGTGGAGATGATTCAATTTGATTTTGATAGCGTTAAAGCTGCAACAAATGACTTTGCAAGTGAAAACAAGCTCGGACAAGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTACCTAATGGACAACATATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAATCCTTTTGGTGGTCAAGCTTCAACATCGTAACTTGGTTAGGCTACTTGGGTTCTGCTTGCAAAGAAGCGAAAGACTTCTCATATATGAGTTTGTACAAAATGGCAGCCTTGACCACTTTATATTTGATTTTGCAAAGCGGTCACTATTAGATTGGGAGACACGTTTCAAAATCATAAATGGCATTGCGAGGGGACTTCTTTACCTTCATGAAGATTCTCGTCATCGAATCATACATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATACAGAAATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATCAAACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGATATATGGCTCCAGAGTATGTAATGCATGGACACTTCTCAGTAAAATCAGATGTCTTTAGCTTTGGCATATTAGTCCTTGAGATTTTGAGTGGCAAAAAAAACACTAATTTTCACAATGGAGAACACTTAGAAGATCTCTCAAGCTTTGCATGGACAAATTGGAGGGAAGGAACAATTGAAAATGTCATAGATTCAACCCTTAGCGTCGGGTCAAGAACTGAGATGGTAAGATGCATCCATATTGGACTATTGTGTGTTCAAGAAGATGTAACAAATCGACCAACAATGACTTCAGTAGTTATGATGCTAAGTAGTTCTTCTATCACCCTTACTATACCCTCTAAACCAGCATTCTTCTTGCATAGTACTACAAATAGATCTAACGTATTGTCAAGTTCAGATGGAACTAATTGTGAAAGTGTTTCTGATCAACCTTCGAAGAATAACATTTCAATTACGGAGATACATCCTCGTTAG 2052 41.72 MGRLSLEALFFVLAASQFIFPTTSQPPFLYRICSDKANYTAGSPFKKNLHNVLLSISSNTQIDYGFYNATSGKVPNTATALALCRGGAPLEQCRSCVYNSTLRITQDCPNQREAEGWYQDCQIRYSNNTIYGVGDNTVQIIFWNFAKAEDPDGFNVAVRNLFDRLRVEAASGSSIKKSAWGGEKIPSPSMDTVYGLVDCFPDLSYLDCLSCLNQLQTTLPNCCNASIGVRLIATSCQLNYELHPIYPPLSSPPPPPPPPLLSPHSPPPLPSPLSSSPSKPGNNGNIGRTRTVVIIVVTTVSAVILLGIFVILILRKQNHKTSLDNSVDLSFGDTTVEISSVEMIQFDFDSVKAATNDFASENKLGQGGFGAVYKGKLPNGQHIAVKRLANNSQQGDVEFKNEILLVVKLQHRNLVRLLGFCLQRSERLLIYEFVQNGSLDHFIFDFAKRSLLDWETRFKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDTEMNSKISDFGMARLFEVDQTQGNTSRIVGTYGYMAPEYVMHGHFSVKSDVFSFGILVLEILSGKKNTNFHNGEHLEDLSSFAWTNWREGTIENVIDSTLSVGSRTEMVRCIHIGLLCVQEDVTNRPTMTSVVMMLSSSSITLTIPSKPAFFLHSTTNRSNVLSSSDGTNCESVSDQPSKNNISITEIHPR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35099549 35102454 + CaPI482276_01g022830.1 Cam01g2283 119365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2283 683 SMART serkin_6 358 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2283 683 ProSiteProfiles Protein kinase domain profile. 358 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2283 683 MobiDBLite consensus disorder prediction 251 284 - -
Cam01g2283 683 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 130 - -
Cam01g2283 683 Pfam Salt stress response/antifungal 150 242 IPR002902 -
Cam01g2283 683 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Cam01g2283 683 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524(InterPro)
Cam01g2283 683 Gene3D Transferase(Phosphotransferase) domain 1 434 636 - -
Cam01g2283 683 ProSiteProfiles Gnk2-homologous domain profile. 136 245 IPR002902 -
Cam01g2283 683 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 108 644 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam01g2283 683 Pfam Protein tyrosine and serine/threonine kinase 361 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2283 683 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Cam01g2283 683 MobiDBLite consensus disorder prediction 251 275 - -
Cam01g2283 683 MobiDBLite consensus disorder prediction 655 683 - -
Cam01g2283 683 Gene3D - 26 129 IPR038408 -
Cam01g2283 683 Gene3D - 135 244 IPR038408 -
Cam01g2283 683 Gene3D Phosphorylase Kinase; domain 1 323 433 - -
Cam01g2283 683 FunFam Cysteine-rich receptor-like protein kinase 10 317 433 - -
Cam01g2283 683 CDD STKc_IRAK 364 622 - -
Cam01g2283 683 SUPERFAMILY Protein kinase-like (PK-like) 346 660 IPR011009 -
Cam01g2283 683 FunFam Cysteine-rich receptor-like protein kinase 28 434 636 - -
Cam01g2283 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2079 Cam-Chr1:33850776 Cam01g2283 Cam-Chr1:35099549 6.00E-110 dispersed
Cam01g2280 Cam-Chr1:35071107 Cam01g2283 Cam-Chr1:35099549 3.00E-199 dispersed
Cam01g2283 Cam-Chr1:35099549 Cam01g2285 Cam-Chr1:35110463 1.10E-240 dispersed
Cam01g2282 Cam-Chr1:35090791 Cam01g2283 Cam-Chr1:35099549 4.40E-167 tandem
Cam01g2283 Cam-Chr1:35099549 Cam01g2284 Cam-Chr1:35104841 4.00E-283 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84915 PF07714 PK_Tyr_Ser-Thr 2.60E-49 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2283 - - - 0.0