Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2284 ATGAGTTCCGAAACGCCTTTCTTCCTGCCTTTCTTCATTCTCGCAGTCCCACACTTAATATTTCCCACAACTTCTCAGCCACCCTTTTTATACTACACCTGCTCTTCCAATGCCAATTACACCATATACAGCCCTTTCAACATAAACCTGGACAACGTACTTCGCTCCATTTCTTCCAACACCCAAGTCGATTACGGCTTCTACAACGCCACTTCCGGCCAAGATCCCGACCGAGCCACCGCTTTGGCTCTTTGCCGTGGTGGTGTTTCATTGGAACAATGTAGAAGCTGTGTGAACAACTCAGCGCTCAGGATTACTCAAGATTGTCCAAACCAGAAAGAGGCAGAGGGATGGTACCAGGATTGTCAAATTCGTTACTCAAACAACTCTATTTACGGCGTTCTCGGAGACAGCACTACGCAGATATTCTTGTGGAACACTCAAATAGCGGAAGACCCAGATGGGTTCAATGAGGCATTGAGGAGTTTGTTGGATCGGCTGCGAATTGAGGCTGCGTCGGGGAGTTCTATTCGAAAGTCTGCTTGGGGAGAAAAGAGGGTTCGGAGTCCAAGCATGGATACCATATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTACTTGGACTGTTTTAACTGCCTCGATCTGCTTCAAAATTCTCTTCCTAGTTGTTGCAACGCCAGCATAGGAGCCAGATTACTTGCAGTTAGTTGTGAACTCAATTATGAGATCCACCCCATCTATGCCTCACTTTTGTCTCCACCGCCGCCTCCTCCACCCACTCTGTCTTCTCCTTCGCCTCCGGCTCCGGCATCACCCCTGCCGTCTTTGCCTCCGAAACCTGGAAATAGTGGCAGTACTGATAGAAGTATAAGTAGAAGTGGAAGTGTTGTAATCGTTATGGTGGCCATCGTTTCTGCTGTCATTCTTCTTCTTGCCATTTTCATCATTTTGATATTGAGGAAGCGAAAGCACAAAAGACCATTAGGTGTATCTCTGGAAGAAACCATCGATGAAATTAGCAGTGTGGAGATGATTCAATTTGATTTTAATAGCATTAAAATCGCAACAAATGACTTTGCAAGTGAAAACAAGCTCGGACAGGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTACCTAATGGACAACATATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAATCCTTTTGGTGGTCAAGCTTCAACATCGTAACTTGGTTAGGCTACTTGGGTTCTGCTTGCAAAGAAGCGAAAGACTTCTCATATATGAGTTTGTACAAAATGGCAGCCTTGACCTCTTTATATTTGATTTTGCAAAGCGGTCACTATTAGATTGGAAAACACGTTTCAAAATCATAAATGGCATTGCGAGGGGACTTCTTTACCTTCATGAAGATTCTCGTCATCGAATCATACATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATACGAAAATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTCGAAGTAGATCAAACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATATAAAGCATGGACAATTCTCAATAAAATCAGATGTTTTTAGCTTTGGTGTCTTGGTTCTTGAGATTTTGAGTGGTCAAAGAAACAATAATTTTCACAATGGAGAACACTCCAAAAATCTCTTAAGCTTTGCATGGACAAATTGGAGGGCAGGAACAATTACAAATGTCATAGATTCCACCCTTAGTATTGGTTCAAGGATCGAGATGATAAGATGCATTCATATTGGACTATTGTGTGTTCAAGAAAGTATAACAAATCGACCAACAATGACTTCAGTAGTTATGATGCTAAATAGTTCTTCTTTCACTCTTCCTATACCCTCTAAACCAGGATTCTTCCTGCATAGTCTTACCAACAAATCGAACAAACTCTTAAAGTTAGATGGAAATAGTTGTGAAAGTCCGTCTATTCAACTTTCGAAGAATGACATTTCAATTACAGACATCCATCCACGTTAG 2058 41.5 MSSETPFFLPFFILAVPHLIFPTTSQPPFLYYTCSSNANYTIYSPFNINLDNVLRSISSNTQVDYGFYNATSGQDPDRATALALCRGGVSLEQCRSCVNNSALRITQDCPNQKEAEGWYQDCQIRYSNNSIYGVLGDSTTQIFLWNTQIAEDPDGFNEALRSLLDRLRIEAASGSSIRKSAWGEKRVRSPSMDTIYGLVDCFPDLSYLDCFNCLDLLQNSLPSCCNASIGARLLAVSCELNYEIHPIYASLLSPPPPPPPTLSSPSPPAPASPLPSLPPKPGNSGSTDRSISRSGSVVIVMVAIVSAVILLLAIFIILILRKRKHKRPLGVSLEETIDEISSVEMIQFDFNSIKIATNDFASENKLGQGGFGAVYKGKLPNGQHIAVKRLANNSQQGDVEFKNEILLVVKLQHRNLVRLLGFCLQRSERLLIYEFVQNGSLDLFIFDFAKRSLLDWKTRFKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDTKMNSKISDFGMARLFEVDQTQGNTSRIVGTYGYMAPEYIKHGQFSIKSDVFSFGVLVLEILSGQRNNNFHNGEHSKNLLSFAWTNWRAGTITNVIDSTLSIGSRIEMIRCIHIGLLCVQESITNRPTMTSVVMMLNSSSFTLPIPSKPGFFLHSLTNKSNKLLKLDGNSCESPSIQLSKNDISITDIHPR 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35104841 35108343 + CaPI482276_01g022840.1 Cam01g2284 119366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2284 685 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 94 646 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam01g2284 685 FunFam Cysteine-rich receptor-like protein kinase 10 321 435 - -
Cam01g2284 685 Gene3D - 27 130 IPR038408 -
Cam01g2284 685 Gene3D - 138 246 IPR038408 -
Cam01g2284 685 CDD STKc_IRAK 366 631 - -
Cam01g2284 685 SMART serkin_6 360 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2284 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2284 685 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Cam01g2284 685 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Cam01g2284 685 Pfam Protein tyrosine and serine/threonine kinase 363 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2284 685 Gene3D Phosphorylase Kinase; domain 1 326 435 - -
Cam01g2284 685 MobiDBLite consensus disorder prediction 256 289 - -
Cam01g2284 685 Gene3D Transferase(Phosphotransferase) domain 1 436 636 - -
Cam01g2284 685 FunFam Cysteine-rich receptor-like protein kinase 28 436 638 - -
Cam01g2284 685 SUPERFAMILY Protein kinase-like (PK-like) 340 630 IPR011009 -
Cam01g2284 685 ProSiteProfiles Protein kinase domain profile. 360 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2284 685 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524(InterPro)
Cam01g2284 685 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
Cam01g2284 685 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Cam01g2284 685 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Cam01g2284 685 MobiDBLite consensus disorder prediction 256 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2284 Cam-Chr1:35104841 Cam01g2289 Cam-Chr1:35129675 2.20E-164 dispersed
Cam03g0502 Cam-Chr3:5932206 Cam01g2284 Cam-Chr1:35104841 6.10E-21 dispersed
Cam01g2283 Cam-Chr1:35099549 Cam01g2284 Cam-Chr1:35104841 4.00E-283 tandem
Cam01g2284 Cam-Chr1:35104841 Cam01g2285 Cam-Chr1:35110463 1.40E-243 tandem
Cam01g2079 Cam-Chr1:33850776 Cam01g2284 Cam-Chr1:35104841 3.70E-112 transposed
Cam01g2284 Cam-Chr1:35104841 Cam02g0182 Cam-Chr2:2767929 6.20E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84916 PF07714 PK_Tyr_Ser-Thr 1.00E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2284 - - - 0.0