Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2285 ATGGATATGGGCAATTTGAGTTTGAGATCAAGGCATTTGCTCCTCTACTCTGTTATTTCACAATTGATGTTTATTATAACCACAACATCTCAGCCTGACTTCTTTTATTACCTCTGTTCAAACAAAGGCAACTACACCAACAACAGTCCATTCAACAAAAATCTCGACAACGTTCTTGCTTCAATCTCCTCCAATTCTAACACCGACAGCCGTCGGGTCGACTACGGTTTCTATAATGCCACCGCCGGTGAAGATCCCAACACAGCCAACGCTAAGGTTCTTTGTCGTAAGGGCGTTCCGTTGGAACAATGCAGAAGTTGTGTGAATGACTCAGTCCGCAGGATTACACAAAACTGCCCAACCCAGAAGGAAGGTGCAGGATGGTACCACCATTGCCAGATTCTTTACTCAAACAACTCTGTTCACGATGAGACAGATTTGTCCGTGACTCAAATTTATTACAACACCGGTGCAGCCCCAGACAAGAACAGTTTCAATGAGGAACTGAGAGAGTTAATGGATCAACTGCGAGAGGAGGCTGCGTCAGGGACTTCGATTCGAAAGTCTGCAGGCGGAGATGTGAAGCTTAAAAGTCCGAATACGTATACAATATATGGGCTTGTTGATTGTTTTCCCGACATGTCGTACTTCGATTGTGATGTCTGCCTCAATCGGCTTCAAAGTAATCTTCCTTCTTGTTGTAGTGGCAGCATAGGAGCAAGACTGCTTGCAGCTAGTTGTCAAATTAATTATGAAATTCACCCTCTGTATGAATCACTTCTCTCTCCACCTTTGCCGCCTCCGCCGACATCACCATTAGCTCCTAATCTCGCCCCTCCATCTTCTCCGTCAGCACATGGAAATAATGGCAATACTGCTAGAACTGTTATAATTGTCGTGGTATCCATCGTTTCAGCCATTATTTTCTTTGTTGGCGTTTGCTTGATTATGAGATTTAGAAACAGAAAGCAAAAAAGACCATTAAGAAAATTTGAAAATGTTGCTATTGGAGATGCCAGTGATGAAATTAGCAGTACAGAGACAATTCATTTTGATTTTGATGTCGTTAAGGATGCAACTAATGACTTCTCAAGTGAAAACAAGCTAGGACAAGGTGGATTTGGAGCTGTTTACAAGGGTAAGCTACCTAATGGACAACATATTGCAGTGAAGAGGCTTGCACATAATTCACAACAAGGAGATGTTGAATTCAAAAATGAAGTACTTTTGGTAGTCAAGCTTCAGCATCGAAACTTGGTTAGACTATTGGGATTCTGCTTGCAAGGAAGCGAAAGACTTCTCATATATGAATTTGTACCAAATGGTAGCCTTGACCATTTCATATTTGATCTTGGGAAGCGGATACAATTAGATTGGGAAAAACGATATAAAATCATAAATGGCACTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATTCATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATGAAGAAATGAATCCAAAGATCGCCGATTTTGGTTTAGCAAGATTGTTCGAAGTAGATGAGACTCAAGGCAATACGAGTAGGATTGTGGGAACTTATGGCTATATGGCTCCAGAGTACATAGTACATGGACAATTTTCGGTAAAATCAGATGTCTTTAGCTTTGGTGTTTTGGTTCTTGAAATTGTGAGTGGCCAAAAAAACAATTGTTTTCGCAATGGAGAAAATATTGAAGATCTTACCAGCTTTACTTGGAATAATTGGAGGGCTAGAACAACCACAAATGTCATAGATTCAACACTTGGTGTTGGCTCAAGGATTGAAATGATAAGATGCATTCACATTGGACTATTGTGTGTTCAGGAAAATGTAGCAAACCGACCAACAATGGCTTTGGTGGTTATGATGTTAAGTAGTTCTTCTTTCACTCTCCCTATACCCTCTAAACCTGCATTCTTCATGCATAGCATCACCAATGGATCCAACACAATGTTAGCATCAGATGAGACTAATCATTCTAAAAGCACATCTCTTCAACATTCGGAAAATGCCGACGTTTCAATTACAGAGCTTCACCCTCGTTAA 2073 40.71 MDMGNLSLRSRHLLLYSVISQLMFIITTTSQPDFFYYLCSNKGNYTNNSPFNKNLDNVLASISSNSNTDSRRVDYGFYNATAGEDPNTANAKVLCRKGVPLEQCRSCVNDSVRRITQNCPTQKEGAGWYHHCQILYSNNSVHDETDLSVTQIYYNTGAAPDKNSFNEELRELMDQLREEAASGTSIRKSAGGDVKLKSPNTYTIYGLVDCFPDMSYFDCDVCLNRLQSNLPSCCSGSIGARLLAASCQINYEIHPLYESLLSPPLPPPPTSPLAPNLAPPSSPSAHGNNGNTARTVIIVVVSIVSAIIFFVGVCLIMRFRNRKQKRPLRKFENVAIGDASDEISSTETIHFDFDVVKDATNDFSSENKLGQGGFGAVYKGKLPNGQHIAVKRLAHNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQGSERLLIYEFVPNGSLDHFIFDLGKRIQLDWEKRYKIINGTARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGLARLFEVDETQGNTSRIVGTYGYMAPEYIVHGQFSVKSDVFSFGVLVLEIVSGQKNNCFRNGENIEDLTSFTWNNWRARTTTNVIDSTLGVGSRIEMIRCIHIGLLCVQENVANRPTMALVVMMLSSSSFTLPIPSKPAFFMHSITNGSNTMLASDETNHSKSTSLQHSENADVSITELHPR 690
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 35110463 35113409 + CaPI482276_01g022850.1 Cam01g2285 119367
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2285 690 ProSiteProfiles Protein kinase domain profile. 363 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2285 690 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 117 649 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam01g2285 690 ProSiteProfiles Gnk2-homologous domain profile. 147 256 IPR002902 -
Cam01g2285 690 SMART serkin_6 363 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2285 690 Gene3D Phosphorylase Kinase; domain 1 329 438 - -
Cam01g2285 690 MobiDBLite consensus disorder prediction 660 682 - -
Cam01g2285 690 Gene3D Transferase(Phosphotransferase) domain 1 439 639 - -
Cam01g2285 690 SUPERFAMILY Protein kinase-like (PK-like) 351 669 IPR011009 -
Cam01g2285 690 FunFam Cysteine-rich receptor-like protein kinase 28 439 641 - -
Cam01g2285 690 Gene3D - 146 255 IPR038408 -
Cam01g2285 690 Gene3D - 31 140 IPR038408 -
Cam01g2285 690 FunFam Cysteine-rich receptor-like protein kinase 10 323 438 - -
Cam01g2285 690 Pfam Protein tyrosine and serine/threonine kinase 366 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2285 690 MobiDBLite consensus disorder prediction 660 690 - -
Cam01g2285 690 Coils Coil 162 186 - -
Cam01g2285 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2285 690 CDD STKc_IRAK 369 633 - -
Cam01g2285 690 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524(InterPro)
Cam01g2285 690 ProSiteProfiles Gnk2-homologous domain profile. 33 141 IPR002902 -
Cam01g2285 690 MobiDBLite consensus disorder prediction 267 287 - -
Cam01g2285 690 Pfam Salt stress response/antifungal 39 138 IPR002902 -
Cam01g2285 690 Pfam Salt stress response/antifungal 159 252 IPR002902 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2281 Cam-Chr1:35078857 Cam01g2285 Cam-Chr1:35110463 5.50E-209 dispersed
Cam01g2282 Cam-Chr1:35090791 Cam01g2285 Cam-Chr1:35110463 2.40E-173 dispersed
Cam01g2283 Cam-Chr1:35099549 Cam01g2285 Cam-Chr1:35110463 1.10E-240 dispersed
Cam01g2285 Cam-Chr1:35110463 Cam01g2289 Cam-Chr1:35129675 1.40E-163 dispersed
Cam01g2284 Cam-Chr1:35104841 Cam01g2285 Cam-Chr1:35110463 1.40E-243 tandem
Cam01g2285 Cam-Chr1:35110463 Cam01g2286 Cam-Chr1:35117694 7.50E-120 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84917 PF07714 PK_Tyr_Ser-Thr 1.20E-47 CL0016 Cam PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2285 - - - 0.0