Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2287 ATGATTCATTTCCTCATTCAAGCACCTTCTCCCTTGCCTTCAACTTTACTGCTTCTGATTTCAATATCTGGATTCATAGTCCCTTGTTGTACCCAACGTTATTTATACTGCTCAGGATCCAACACGGCTCACCCCAATCTAAATTCTGACATTCATTTCCTATTGAATTCCTTGGTCTCTCGAGCTTCTTCTCGCACTTTCTACACTGAGACCTCTAATGGAATCCATGGCCTCTTCCTCTGCCGAGGGGATCTTCCCAACGAGGCCTGTCGTACCTGCGTCGAAGGAGCTAGTCAACAAATCAAGGTCGACTGCGCATCACAAACAAACGGTACCATAGGCTTTGATGAATGCATGTTGAGATACTCAGCTGTGAACTTCTTTGGAGTCCTGGAGACAGCTCCAAGAATACTGCTATATAACAGTCTGAACCAATCTACTTTTGAAGATCGTGATTTCGTCGATCTTGCATTGGTGTCTAATTTAGTAAGAGATGCTACAAATGCAGATTTGATGTTCAAGGAAGGTGAGGTAAATGTGCAGGGGGTGGATCAGAGATTTGGATTTGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGTTCTGTTTGACAATTTTGGTGGATTACGCAAAGGGATGTTGCCTAAGGCAAAGAGGATGGCGAGTTTTAGCCCCCAATTGTAATTTAAGAGTTGAGGCCTTTCGTTTTTATGGAATACCAGGACCTCCATCTTTGCCACTTGATGAAGAAGGAGGGAACAGAACAAGGATCATAGTCATCAGCATATCAACAGTTGCAGCAGCGGCAATTCTGCTAGGCCTATTGTATGGCTCATTTTTATGGAGAAACAAAAGACAGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGGGCAGATCCCTCACTGAGGCAACATTTTGATGCAACAAATCACGACAATGATGGAGATATGCATTACTTCAACTTTAGTACTCTAAAGGCTGCTACAGATGACTTTTCAGATGTTCATAAACTTGGAGAAGGGGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGGTGGTGAGGAAGTAGCAGTTAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGGAGAAGAAAAGCTTTTAGTCTATGAGTACATGGCAAATACTAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTTGACTGGCTCAAGCGTGAAAACATTGTCAATGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGAGATTTGAAAGCGAGCAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGACTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGTTATATGGCACCAGAGTATGCTATGGAGGGAGTTTTCTCAGTTAAATCCGATGTATACAGTTTTGGAGTTCTTATGCTAGAAGTGATGAGTGGGAGAAAAAACATTGGCTTTCTGAACATGGACAGAACGCAGAACCTTCTGTCATATGCGTGGGAGCTATGGAGTGAAGGTAGAGCAGAAGAAATGATAGACAAGAACTTGGCTGGAGATTGTCCTGAGAGTGAGGCTGTAAAATGGATCCACATAGGGTTGTTGTGTGTGCAAGAAGATCCTGACATCAGGCCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCCAATCGATTCACCTTCCTCAGCCATCAAAACCTCCATTTCTTACAGCTAGAGGGTCTCTAAGTAGATATCAATATTCAACAACTGAAACAGGGACAAGGTTACACACCACAGATCAGTCGTCTACTACTGCTTCTATCTAG 1968 42.43 MIHFLIQAPSPLPSTLLLLISISGFIVPCCTQRYLYCSGSNTAHPNLNSDIHFLLNSLVSRASSRTFYTETSNGIHGLFLCRGDLPNEACRTCVEGASQQIKVDCASQTNGTIGFDECMLRYSAVNFFGVLETAPRILLYNSLNQSTFEDRDFVDLALVSNLVRDATNADLMFKEGEVNVQGVDQRFGFAQCTRDIIKRDCEFCLTILVDYAKGCCLRQRGWRVLAPNCNLRVEAFRFYGIPGPPSLPLDEEGGNRTRIIVISISTVAAAAILLGLLYGSFLWRNKRQERDRSEELPLRNRADPSLRQHFDATNHDNDGDMHYFNFSTLKAATDDFSDVHKLGEGGFGPVYKGKLMGGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLKCKQLDWLKRENIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLMLEVMSGRKNIGFLNMDRTQNLLSYAWELWSEGRAEEMIDKNLAGDCPESEAVKWIHIGLLCVQEDPDIRPTMSMVVLMLGSQSIHLPQPSKPPFLTARGSLSRYQYSTTETGTRLHTTDQSSTTASI 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35123888 35126695 - CaPI482276_01g022870.1 Cam01g2287 119369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2287 655 FunFam Uncharacterized protein 412 613 - -
Cam01g2287 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2287 655 SUPERFAMILY Protein kinase-like (PK-like) 319 636 IPR011009 -
Cam01g2287 655 ProSiteProfiles Protein kinase domain profile. 336 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2287 655 Gene3D - 30 127 IPR038408 -
Cam01g2287 655 Gene3D - 138 238 IPR038408 -
Cam01g2287 655 Pfam Salt stress response/antifungal 40 123 IPR002902 -
Cam01g2287 655 Pfam Salt stress response/antifungal 158 234 IPR002902 -
Cam01g2287 655 SMART serkin_6 336 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2287 655 Gene3D Transferase(Phosphotransferase) domain 1 412 615 - -
Cam01g2287 655 ProSiteProfiles Gnk2-homologous domain profile. 29 127 IPR002902 -
Cam01g2287 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 155 622 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam01g2287 655 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 301 411 - -
Cam01g2287 655 Pfam Protein tyrosine and serine/threonine kinase 340 604 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2287 655 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Cam01g2287 655 CDD STKc_IRAK 342 607 - -
Cam01g2287 655 Gene3D Phosphorylase Kinase; domain 1 310 411 - -
Cam01g2287 655 MobiDBLite consensus disorder prediction 636 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2287 Cam-Chr1:35123888 Cam03g0501 Cam-Chr3:5921619 3.80E-129 dispersed
Cam01g2286 Cam-Chr1:35117694 Cam01g2287 Cam-Chr1:35123888 6.20E-210 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84919 PF07714 PK_Tyr_Ser-Thr 3.20E-50 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2287 - - - 0.0