Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2299 ATGGCGGCTCCATATCCGGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCTTCAATCCAACGCTGGCTTGACGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTTCCCTAATCCCTAACCATGCCCTCCGAAGCTTAATTTCAAATTTCAACCCTGTTTCTCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCAAGGATTTCAAAGCGCGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGTGCCGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCCAGCCTCCAAGAGAAGGCTCTCTCGCTCTTGCTTAATCTCAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAGGGAGCTATTGGTCTCACCGTGGCTGCTCTTCAAGCTAGGTCCGCGGATTGCAGAGCCGTAGCAGCCACGATGCTGACCAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGGGCATACCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGGAACGGGAATAACAGGGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCAAACTCTGGGCTAGATAGAGCAGTGGAAGTTCTGGGGGTTTTGGCTAAGTGCAGGGAAGGTCGAGAAGAGATGCAACGGTTCAAAGGATGTGTGGAGATTTTGGGTCGTGTTTTGCGAAATGGAGGCCCAAGAGGAATTCAATATGCTCTTCTAACTCTGACTTCCCTCTGCTGCCATTGCGAGCGAGTGTGCGTGGAGGCAAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGAAAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGCGGAAACAACCCATGA 1098 49.82 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARISKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGVLAKCREGREEMQRFKGCVEILGRVLRNGGPRGIQYALLTLTSLCCHCERVCVEARREGVLGICMTLIDDENEKIRANAANLIHILRGNNP 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35185090 35186187 - CaPI482276_01g022990.1 Cam01g2299 119381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2299 365 PANTHER U BOX DOMAIN-CONTAINING 6 361 - -
Cam01g2299 365 SUPERFAMILY RING/U-box 3 72 - -
Cam01g2299 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Cam01g2299 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Cam01g2299 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Cam01g2299 365 SMART arm_5 200 241 IPR000225 GO:0005515(InterPro)
Cam01g2299 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g2299 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Cam01g2299 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g2299 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Cam01g2299 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
Cam01g2299 365 Gene3D - 269 365 IPR011989 -
Cam01g2299 365 Gene3D - 86 268 IPR011989 -
Cam01g2299 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515(InterPro)
Cam01g2299 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g2299 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2299 K27970 - - csv:101213883 647.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2299 Cam-Chr1:35185090 Cam11g0631 Cam-Chr11:7846123 4.20E-45 dispersed
Cam01g2299 Cam-Chr1:35185090 Cam05g2722 Cam-Chr5:34560158 1.80E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1516 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cam02g1298 . 213 857 U-box Gene Family AT2G23140 66.6 8.5e-126 448.0
Cam08g2190 . 1 778 U-box Gene Family AT1G24330 59.7 5.4e-244 840.9
Cam11g1412 . 1 755 U-box Gene Family AT1G24330 58.2 2.6e-230 795.4
Cam08g2190 . 1 777 U-box Gene Family AT1G67530 59.4 1.5e-241 832.8
Cam11g1412 . 1 756 U-box Gene Family AT1G67530 57.4 1.4e-226 783.1
Cam01g2299 . 1 362 U-box Gene Family AT4G21350 62.6 4.8e-121 431.4
Cam07g0206 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Cam07g0630 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Cam01g0623 . 635 834 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cam03g0158 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cam05g2319 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cam02g2095 . 255 425 U-box Gene Family AT1G71020 57.6 7.7e-47 185.3
Cam07g0630 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Cam01g0623 . 421 1024 U-box Gene Family AT1G23030 52.0 2.2e-83 307.0
Cam03g0158 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cam02g2095 . 93 635 U-box Gene Family AT2G28830 50.6 2.8e-99 359.8
Cam03g0158 . 24 689 U-box Gene Family AT3G46510 68.0 1.3e-169 593.6
Cam02g2095 . 3 638 U-box Gene Family AT3G46510 66.4 8.7e-158 554.3
Cam05g2319 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cam02g1021 . 36 640 U-box Gene Family AT3G46510 50.2 6.1e-87 318.9
Cam05g2319 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cam02g2095 . 13 628 U-box Gene Family AT3G54850 57.1 3.9e-115 412.5
Cam03g0158 . 31 650 U-box Gene Family AT3G54850 55.6 2.0e-103 373.6
Cam02g1021 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Cam04g0651 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cam03g0697 . 1 714 U-box Gene Family AT1G29340 68.0 1.1e-246 849.7
Cam05g1291 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cam04g0511 . 4 422 U-box Gene Family AT3G52450 52.4 6.8e-119 424.5
Cam10g1792 . 1 403 U-box Gene Family AT3G52450 50.9 7.8e-115 411.0
Cam10g1792 . 1 403 U-box Gene Family AT2G35930 55.8 1.5e-120 429.9
Cam04g0511 . 7 422 U-box Gene Family AT2G35930 51.4 7.9e-117 417.5
Cam05g1176 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cam05g1176 . 1 424 U-box Gene Family AT1G49780 64.6 5.9e-152 534.3
Cam01g1597 . 1 407 U-box Gene Family AT5G64660 53.9 7.1e-121 431.0
Cam01g1597 . 1 407 U-box Gene Family AT5G09800 50.8 1.8e-105 379.8
Cam05g2861 . 1 454 U-box Gene Family AT3G49810 63.2 6.1e-155 544.3
Cam08g2137 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Cam08g2137 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cam05g2861 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cam05g0179 . 82 953 U-box Gene Family AT2G45910 53.0 2.5e-234 808.9
Cam11g0174 . 4 726 U-box Gene Family AT2G19410 50.2 8.1e-211 730.7
Cam01g0472 . 65 841 U-box Gene Family AT4G25160 51.8 1.2e-217 753.4
Cam09g1920 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cam01g1458 . 29 498 U-box Gene Family AT5G40140 51.1 8.8e-55 211.8
Cam08g1383 . 38 846 U-box Gene Family AT1G76390 61.5 2.7e-270 928.3
Cam08g1383 . 47 846 U-box Gene Family AT1G20780 62.0 3.2e-279 958.0
Cam08g2190 . 1 780 U-box Gene Family AT1G27910 62.6 9.2e-268 919.8
Cam11g1412 . 1 767 U-box Gene Family AT1G27910 62.3 8.9e-263 903.3
Cam01g1801 . 444 1035 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cam05g0242 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cam10g1838 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Cam01g1878 . 4 803 U-box Gene Family AT5G65500 50.1 2.6e-209 725.7
Cam05g0451 . 61 573 U-box Gene Family AT1G04510 74.2 2.4e-219 758.4
Cam05g0451 . 61 542 U-box Gene Family AT2G33340 73.3 2.8e-206 714.9
Cam07g0205 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cam10g1516 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cam02g1298 . 213 857 U-box Gene Family AT2G23140 66.6 8.5e-126 448.0
Cam08g2190 . 1 778 U-box Gene Family AT1G24330 59.7 5.4e-244 840.9
Cam11g1412 . 1 755 U-box Gene Family AT1G24330 58.2 2.6e-230 795.4
Cam08g2190 . 1 777 U-box Gene Family AT1G67530 59.4 1.5e-241 832.8
Cam11g1412 . 1 756 U-box Gene Family AT1G67530 57.4 1.4e-226 783.1
Cam01g2299 . 1 362 U-box Gene Family AT4G21350 62.6 4.8e-121 431.4
Cam07g0206 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Cam07g0630 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Cam01g0623 . 635 834 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cam03g0158 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cam05g2319 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cam02g2095 . 255 425 U-box Gene Family AT1G71020 57.6 7.7e-47 185.3
Cam07g0630 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Cam01g0623 . 421 1024 U-box Gene Family AT1G23030 52.0 2.2e-83 307.0
Cam03g0158 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Cam02g2095 . 93 635 U-box Gene Family AT2G28830 50.6 2.8e-99 359.8
Cam03g0158 . 24 689 U-box Gene Family AT3G46510 68.0 1.3e-169 593.6
Cam02g2095 . 3 638 U-box Gene Family AT3G46510 66.4 8.7e-158 554.3
Cam05g2319 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cam02g1021 . 36 640 U-box Gene Family AT3G46510 50.2 6.1e-87 318.9
Cam05g2319 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cam02g2095 . 13 628 U-box Gene Family AT3G54850 57.1 3.9e-115 412.5
Cam03g0158 . 31 650 U-box Gene Family AT3G54850 55.6 2.0e-103 373.6
Cam02g1021 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Cam04g0651 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cam03g0697 . 1 714 U-box Gene Family AT1G29340 68.0 1.1e-246 849.7
Cam05g1291 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cam04g0511 . 4 422 U-box Gene Family AT3G52450 52.4 6.8e-119 424.5
Cam10g1792 . 1 403 U-box Gene Family AT3G52450 50.9 7.8e-115 411.0
Cam10g1792 . 1 403 U-box Gene Family AT2G35930 55.8 1.5e-120 429.9
Cam04g0511 . 7 422 U-box Gene Family AT2G35930 51.4 7.9e-117 417.5
Cam05g1176 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cam05g1176 . 1 424 U-box Gene Family AT1G49780 64.6 5.9e-152 534.3
Cam01g1597 . 1 407 U-box Gene Family AT5G64660 53.9 7.1e-121 431.0
Cam01g1597 . 1 407 U-box Gene Family AT5G09800 50.8 1.8e-105 379.8
Cam05g2861 . 1 454 U-box Gene Family AT3G49810 63.2 6.1e-155 544.3
Cam08g2137 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Cam08g2137 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Cam05g2861 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cam05g0179 . 82 953 U-box Gene Family AT2G45910 53.0 2.5e-234 808.9
Cam11g0174 . 4 726 U-box Gene Family AT2G19410 50.2 8.1e-211 730.7
Cam01g0472 . 65 841 U-box Gene Family AT4G25160 51.8 1.2e-217 753.4
Cam09g1920 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Cam01g1458 . 29 498 U-box Gene Family AT5G40140 51.1 8.8e-55 211.8
Cam08g1383 . 38 846 U-box Gene Family AT1G76390 61.5 2.7e-270 928.3
Cam08g1383 . 47 846 U-box Gene Family AT1G20780 62.0 3.2e-279 958.0
Cam08g2190 . 1 780 U-box Gene Family AT1G27910 62.6 9.2e-268 919.8
Cam11g1412 . 1 767 U-box Gene Family AT1G27910 62.3 8.9e-263 903.3
Cam01g1801 . 444 1035 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cam05g0242 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cam10g1838 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Cam01g1878 . 4 803 U-box Gene Family AT5G65500 50.1 2.6e-209 725.7
Cam05g0451 . 61 573 U-box Gene Family AT1G04510 74.2 2.4e-219 758.4
Cam05g0451 . 61 542 U-box Gene Family AT2G33340 73.3 2.8e-206 714.9
Cam07g0205 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004862 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 0 38