Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2300 ATGGGTAATAATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTCATTTCATTCTTACTCTGTTTTTCTCCTCTGTTCTGCGACGCTGCAAATTCATTTACAAAGGGAAGAGGTTTAAGAGATGGTACTAATGAAACCCTCATATCTCTGAATGAGTCCTACGAACTGGGATTCTTCAGCCCAATAAATTCTTCATCACGATACGTCGGAATATGGTATCACAAGATCGAGGAACAGTCTGTTATTTGGGTTGCGAATAGAGATAGGCCACTTCCTAACAGAGATGGGGTTTTGACAATCGGTGACGACGGGAACTTGGTCGTTCTGGATGGCAACAACGTCTCTTTTTGGACAAGCAATATCACAGCGAATGCATTTGATCCCAGAAACTTAACTCTTCATAACCATGGAGAATTGGTTCTTACGAGCGGAGACGACTCATCGAAAGTTCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAATATGGAGGTGAGAGTGAACTCAGAAATTGGCGAGAAACGAATGTTTATGTCATGGAAATCAGAGACAGATCCGGCCGTCGGAAATTACTGTCTGGGTGTGGATCCTCGTGGAGCTGTACAGATTATCATTTGGAATGGGAATAATCGATGGTGGAGAAGCGGCCATTGGGATAGGCAGATTTTTTCTGGGATTCCAAATATGCGTTCTACGTCTTTGTACGGTTTCAAGATTACCCCTGAAAATGGAAATACCATTAGTGTAACTTTTCAGGCACTGAATGATTCCGATAAGCTGAAATTTCAAATCCTGTGGAATGGTAAAGAAGCACAGCAACGATTGAATGAAGCAAATCGCAAATGGGAAACGATTCGTTTACTGCCATCTAACGATTGCGATTTCTACAATTTTTGTGGGGATTTTGGGGTTTGTTCTGAAACGAGTCGTCCTAAGTGTAGCTGCCCTCAAGGGTTTATTCCCAAAAACAAAGAACAATGGGACAGAGGGACCTGGTCAGATGGGTGTCAGAGGAAGACTCCATTGCTTCAGGAGAGAATGAACAGTAATCCGAATGGAACTATTGAAGATGGTGAAGAAGATGGGTTTGTGCCCGTACCATTTGTGAAATTGCCCGATTTCATAACTGGAGTAGTGGTGGATTCGTGTAGAGATAGATGTTCCAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCCTGGAATTGGCTGTGCTACTTGGGATGGACCTTTAAAAGATATTCAGAAATTCGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGATATCTGTAGATAGTGAGAGCAAATTGTCAGCCGGTGTGATTGTATTGATATGTTTAGGAGCGGCAGCTGCCATAGCCATAATAGCGTTTCTGCTATGGAAATTCGGAGGCAAAATGAAAGGTTCACCGGCTGCTTCTTCAAGTGAACCTCAGAACAAAACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAACTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCATAGAAGGCGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGTTGCGGCTACTGATAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGCTTCGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAGTTGCTGTCAAGAGGCTTTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTAATAGGAAAGTTACAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAAACAAGCAGGCACTACTAGACTGGAAAAAACGGTTGTCAATCATCGAGGGAATTGCACGAGGGCTGCTATACCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAACATTTTGCTTGACGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCAACAAATACAATTCGAGTTGTTGGCACATATGGTTACATGGCTCCAGAGTACGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTCTATAGTTTTGGTGTATTATTATTGGAAATAATCTGTGGTCGGAGGAATACTAGCTTTCGCTCAACTGAATACTTAACCCTTATTAGCTATGCTTGGAAACTTTGGAATGAAGGTAGAGCGATTGAACTTCTCGACCCGTATATTAGCGATTCATCCCCTGAGAATGAAGTATTGAAATGCATACATGTGGCAATGTTGTGTGTTCAAGACTCTCCAGCGTATAGGCCAACATTGCAATCCTTGGTACTAATGCTAGAGAGTGAATCTACATCTCTACCACAGCCAAGACAACCCACCTATACTTCAACAAGAGCCTCGATCGATACAGACTTGTTTACAGAAGGCCACGACATTGTATCGTCAAACGACATAACAGTAACAATGTTGGATGGTAGATAG 2580 42.44 MGNNCRKVVGFLQFFVISFLLCFSPLFCDAANSFTKGRGLRDGTNETLISLNESYELGFFSPINSSSRYVGIWYHKIEEQSVIWVANRDRPLPNRDGVLTIGDDGNLVVLDGNNVSFWTSNITANAFDPRNLTLHNHGELVLTSGDDSSKVHWSSFEHPTDTFLPNMEVRVNSEIGEKRMFMSWKSETDPAVGNYCLGVDPRGAVQIIIWNGNNRWWRSGHWDRQIFSGIPNMRSTSLYGFKITPENGNTISVTFQALNDSDKLKFQILWNGKEAQQRLNEANRKWETIRLLPSNDCDFYNFCGDFGVCSETSRPKCSCPQGFIPKNKEQWDRGTWSDGCQRKTPLLQERMNSNPNGTIEDGEEDGFVPVPFVKLPDFITGVVVDSCRDRCSNSSSCVAYSDAPGIGCATWDGPLKDIQKFDGVGNTLNIRLAHSDLISVDSESKLSAGVIVLICLGAAAAIAIIAFLLWKFGGKMKGSPAASSSEPQNKTEVPMFDLSKSRELSAELSGPYELGIEGEQLSGPDLPMFNFNCIVAATDNFSEENKLGQGGFGPVYKGKLPCGQEVAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEIICGRRNTSFRSTEYLTLISYAWKLWNEGRAIELLDPYISDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDITVTMLDGR 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35192918 35196235 - CaPI482276_01g023000.1 Cam01g2300 119382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2300 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 156 - -
Cam01g2300 859 ProSiteProfiles Protein kinase domain profile. 541 827 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2300 859 CDD STKc_IRAK 547 813 - -
Cam01g2300 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2300 859 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Cam01g2300 859 CDD B_lectin 43 159 IPR001480 -
Cam01g2300 859 CDD PAN_AP_plant 360 433 - -
Cam01g2300 859 PIRSF SRK 5 859 IPR024171 GO:0004674(InterPro)
Cam01g2300 859 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cam01g2300 859 Pfam PAN-like domain 363 417 IPR003609 -
Cam01g2300 859 Gene3D Phosphorylase Kinase; domain 1 516 616 - -
Cam01g2300 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 511 616 - -
Cam01g2300 859 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 223 IPR036426 -
Cam01g2300 859 Pfam Domain of unknown function (DUF3403) 814 859 IPR021820 GO:0004674(InterPro)
Cam01g2300 859 Pfam Protein tyrosine and serine/threonine kinase 544 810 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2300 859 SUPERFAMILY Protein kinase-like (PK-like) 526 836 IPR011009 -
Cam01g2300 859 Gene3D Transferase(Phosphotransferase) domain 1 617 830 - -
Cam01g2300 859 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Cam01g2300 859 SMART blect_4 39 159 IPR001480 -
Cam01g2300 859 Gene3D - 29 156 IPR036426 -
Cam01g2300 859 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544(InterPro)
Cam01g2300 859 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 825 - -
Cam01g2300 859 SMART serkin_6 541 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2300 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 617 820 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2300 Cam-Chr1:35192918 Cam03g0541 Cam-Chr3:6249612 7.70E-207 dispersed
Cam11g1581 Cam-Chr11:28565856 Cam01g2300 Cam-Chr1:35192918 6.80E-71 dispersed
Cam07g0598 Cam-Chr7:10521900 Cam01g2300 Cam-Chr1:35192918 5.90E-86 transposed
Cam09g0254 Cam-Chr9:3168723 Cam01g2300 Cam-Chr1:35192918 2.80E-127 transposed
Cam01g2300 Cam-Chr1:35192918 Cam02g0162 Cam-Chr2:2645804 3.00E-118 wgd
Cam01g2300 Cam-Chr1:35192918 Cam03g0533 Cam-Chr3:6181029 5.80E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84921 PF07714 PK_Tyr_Ser-Thr 3.50E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2300 - - - 0.0