Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2335 ATGGGTTGTCCAAACTGGAATTTGTTCATGAAGATCTTAATTGGGCTGCTCTTGGTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTGTTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTTGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCGTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGCATTTGCCTCGCTAACACAACTAATGGACCTGTCACTAAATAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATAAACTTTCTGGGATGCTCGACGCTCTACAGGATCTTCCCTTGTCGGATTTAAAAGATGGGAACCCTTTTAATACTACGATAATTTCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGTCAGCCATTGTCGTCAGGGACTCCTGGATCGAATGGAGCAAGGACCTTTTTCTCTGTTAAGCGGATAATTTGGATTGTTATTATTGGCACAGCAATATTATTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGTTTGAAAAGAAGCAAGCATCGAGAAGACACCGAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGACCTCGGTTGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCTCAAGGCTACATGATGGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTTCGTAAAGACCTTACGGAGAGTTCGAGCATAAGCATAAATGACTTCCCTGCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATAGTGGCAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAGGATAATCTTCTGGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGGAGGCTTCTGGCTGTTAAGAAACTGGACGGATCCTCTTCAACTAATTGGAGCGATGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGCGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGTAAAAACGGCACGCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTACCATGCACCAAAACTTTAAGTCTGCTAACATTCTCTTAGACAATGAGCTAAAACCACAAGTCTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCGGCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGGAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTGCATGATATTGATGCATTATCAAGAATGGTCGATCCATCTCTTAATGGCATGTATCCTGTTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCCTGTATAATGGTCAAGTTATTGGTTGTGTTCTCCGGAGATGGCGCCTTTATTCCAAATGTAAAAACTTTGGAAGACGTCATTACATTATTGAGCATCATTGAAACAACATATCAGCCTCGTGTATTGGCTGAAGATTTATTTTGGACACATCCTTTTACAAATGTTAGCGACCTCCCATCCTTGAATTTAATTGTTCAACCTCCGCTACAACAATTTGTGTATCGGATAACGACAGATGCTGCATATTGA 2370 43.71 MGCPNWNLFMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPAFASLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLATLHLQNNKLSGMLDALQDLPLSDLKDGNPFNTTIISSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSSGTPGSNGARTFFSVKRIIWIVIIGTAILLALGFCLLVSICLKRSKHREDTEILRDNADMASKYKPKPTKTSVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTSRLHDGQDTNGKRKDASNTSFRKDLTESSSISINDFPAPPPPPPFPLLSTQEIAKPIVAAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTNWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPTMHQNFKSANILLDNELKPQVSDSGLARLLSSASQSAARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMVKLLVVFSGDGAFIPNVKTLEDVITLLSIIETTYQPRVLAEDLFWTHPFTNVSDLPSLNLIVQPPLQQFVYRITTDAAY 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35453964 35461196 - CaPI482276_01g023350.1 Cam01g2335 119417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2335 789 ProSiteProfiles Protein kinase domain profile. 454 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2335 789 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
Cam01g2335 789 Gene3D Transferase(Phosphotransferase) domain 1 532 712 - -
Cam01g2335 789 SUPERFAMILY Protein kinase-like (PK-like) 431 711 IPR011009 -
Cam01g2335 789 SMART serkin_6 454 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2335 789 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 532 713 - -
Cam01g2335 789 Gene3D Phosphorylase Kinase; domain 1 421 531 - -
Cam01g2335 789 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Cam01g2335 789 MobiDBLite consensus disorder prediction 319 407 - -
Cam01g2335 789 Gene3D Ribonuclease Inhibitor 39 234 IPR032675 -
Cam01g2335 789 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 232 - -
Cam01g2335 789 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 709 IPR046959 -
Cam01g2335 789 Pfam Protein tyrosine and serine/threonine kinase 458 654 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2335 789 SUPERFAMILY L domain-like 35 216 - -
Cam01g2335 789 MobiDBLite consensus disorder prediction 319 385 - -
Cam01g2335 789 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 423 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2335 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2330 Cam-Chr1:35405567 Cam01g2335 Cam-Chr1:35453964 3.90E-15 dispersed
Cam01g2335 Cam-Chr1:35453964 Cam07g1140 Cam-Chr7:25833262 1.00E-96 dispersed
Cam01g2334 Cam-Chr1:35446589 Cam01g2335 Cam-Chr1:35453964 3.10E-36 tandem
Cam01g2335 Cam-Chr1:35453964 Cam02g0136 Cam-Chr2:2464377 5.00E-136 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam01g0991 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.0e-85 312.4
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam07g1140 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.1 1.0e-204 710.3
Cam09g0143 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 1.3e-186 650.2
Cam08g0918 . 20 690 Strubbelig Receptor Gene Family AT1G53730 50.1 4.9e-154 542.0
Cam01g0991 . 17 689 Strubbelig Receptor Gene Family AT1G53730 50.9 3.4e-147 519.2
Cam07g1140 . 11 714 Strubbelig Receptor Gene Family AT3G14350 56.7 4.8e-183 638.3
Cam09g0143 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.6e-167 586.6
Cam01g0991 . 138 711 Strubbelig Receptor Gene Family AT4G22130 63.0 1.3e-178 623.2
Cam07g1140 . 398 724 Strubbelig Receptor Gene Family AT4G22130 64.1 2.7e-120 429.5
Cam09g0143 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 6.3e-117 418.3
Cam02g0136 . 484 789 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cam08g0918 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cam01g2335 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84922 PF07714 PK_Tyr_Ser-Thr 1.20E-33 CL0016 Cam PK