Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2370 ATGGACGACCACCACAATCCCCACCACCACCACCACCATGAACTCCCCCCATTCCCCTCCGCCGCCGCCATTCTCCACTCTCCTCCTCCTCCTCCTCAAAATTCATGTTATCTCCCACCTAGTCTTTCTCAAACTTGCTTGGGATTCTCCTCCTCCGCCCCACAATCCTATTTTTACTCAAATCCTCCTCCTCTACATGAACAACTTCCATCCCATTTCCCACCTTCTTCCACCTTCCTCACTTATGGTTTCAATGAGCCAACTAATTCTCTATTCCCTAAAGATGAAGGAAGAAGGGCTATGGATGCTTGGAGTACTAAAGTCGCTCGTACCAACCGAAGACTCGCCCGCCAAAGAACCCTTACTTTAACCCGAACCACTTCTTCTTCCTCTTCTGCAGCTTATAATGGTTGTTATAATGATGAATATTCTAAGGGCTTAACAATAACCCACTTCCCAAACACTGATCCCTCTCACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTCACTGATAAGGAAGGTATCCAAATTGTGGTGAGAGATGTGAACTCAATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGATTTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCAATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCGAGAATGGAAGAAAATAACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTGTGGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGATGCTTCATTAGCTTTGTTGATCGAAGAGCTCAAACACAAAGCCGACGACGACCCCCACGCGCCGCCCTGCTGCAACGACTATTCCTACTTCACCGCTGCTACTATGATGGGAGGTGCTACAATAAAAGGGAATTATAATAACATTAATAATAACAATAATGCGACTAATACTAATTACAAGGAAGTAATGGAGGATCTGCAGGGGATTAATAATAATAATAATAATAATAATAATAATAATAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCGGAAGTAACTGGATTCAAGTTCCCTCTCTTTGACTATTTCAGCAACAATGATAGAACGTGA 1296 43.29 MDDHHNPHHHHHHELPPFPSAAAILHSPPPPPQNSCYLPPSLSQTCLGFSSSAPQSYFYSNPPPLHEQLPSHFPPSSTFLTYGFNEPTNSLFPKDEGRRAMDAWSTKVARTNRRLARQRTLTLTRTTSSSSSAAYNGCYNDEYSKGLTITHFPNTDPSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGIQIVVRDVNSIRKWTMKYKYWANNRSRMYVLENTGDFVRQNGLLMGDSMTLYEDDCKNLYVAVEKGENHSRMEENNKQQQQQQQQQQQCGNLSNMEIKDEEEDASLALLIEELKHKADDDPHAPPCCNDYSYFTAATMMGGATIKGNYNNINNNNNATNTNYKEVMEDLQGINNNNNNNNNNNNGNGFEDCFGGLDTLPEVTGFKFPLFDYFSNNDRT 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35702871 35706471 - CaPI482276_01g023700.1 Cam01g2370 119452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2370 431 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 119 308 IPR044800 GO:0003700(InterPro)
Cam01g2370 431 CDD B3_DNA 178 274 IPR003340 GO:0003677(InterPro)
Cam01g2370 431 SUPERFAMILY DNA-binding pseudobarrel domain 178 276 IPR015300 -
Cam01g2370 431 MobiDBLite consensus disorder prediction 280 299 - -
Cam01g2370 431 MobiDBLite consensus disorder prediction 1 32 - -
Cam01g2370 431 MobiDBLite consensus disorder prediction 1 16 - -
Cam01g2370 431 SMART B3_2 179 280 IPR003340 GO:0003677(InterPro)
Cam01g2370 431 Pfam B3 DNA binding domain 181 276 IPR003340 GO:0003677(InterPro)
Cam01g2370 431 ProSiteProfiles B3 DNA-binding domain profile. 179 280 IPR003340 GO:0003677(InterPro)
Cam01g2370 431 Coils Coil 375 395 - -
Cam01g2370 431 Gene3D - 168 297 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2370 Cam-Chr1:35702871 Cam09g0906 Cam-Chr9:9331855 8.50E-29 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51362 PF02362 B3 7.20E-16 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2370 K09287 - csv:105436043 511.531