Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2388 ATGGAGTCCCAGTTGCTCTCACGCGCCACTTCCTTCGCCGGCGGCATTCCCACTCTCCGCAAGTTGCACAGAGACACCATCACTAACAACAACCATGTCGCCTTCGTCCACACCAGGCCCATCGCCGAGGGAGCCAACTTGATCTGGGGAAGACAACTCCGCCCCTCTTTACTGCTCGATACGCCGCATCTACTCTCCGCCAAACGGGAGACGATTCGCCCTACCTTTGCGGCGGCCTCCTCTTCTTCCGCCGGAGGTAGCGATTCCGCCGGGGAGGCGAAGGTTGCTCCGGTGGGGTTCTTAGAGAAGTATCCGGCGTTGGTCACCGGATTCTTCTTCTTTATGTGGTACTTCCTGAACGTGATTTTCAATATCCTCAACAAGAAGATATATAACTACTTCCCCTATCCATATTTTGTGTCGGTGATCCATTTATTGGTTGGGGTGGTGTACTGTTTGATAAGCTGGGCTGTGGGTCTTCCTAAGCGAGCACCTATTGATTCAACCCTCCTGAAGTTGCTGATCCCTGTAGCTTTCTGTCATGCACTTGGCCATGTCACTAGCAATGTCTCATTCGCGGCTGTTGCTGTCTCATTCACTCATACAATCAAAGCTCTGGAACCGTTCTTTAACGCTGCCGCTTCTCAATTCATTTTGGGGCAACCCATTCCCATTACCTTATGGCTTTCATTGGCTCCCGTTGTCATTGGTGTGTCAATGGCATCCTTGACTGAGCTTTCATTTAACTGGACTGGTTTCATTAGTGCTATGATTTCCAATATCTCCTTTACCTACAGAAGTATTTATTCAAAGAAAGCCATGACTGACATGGACAGCACCAACGTTTATGCCTACATTTCCATTATTGCTCTCCTTTTCTGCATTCCACCTGCTGTAATTGTGGAAGGGCCTCAACTGCTGAAGTTTGGTTTCAATGATGCCATAGCCAAAGTTGGTCTAACCAAATTCGTTTCAGATCTCTTCTGGGTAGGGATGTTTTATCATCTTTACAATCAGTTAGCAACCAACACCTTAGAGAGGGTGGCACCACTTACCCATGCAGTTGGAAATGTGCTGAAACGTGTATTTGTGATTGGATTCTCCATCATTATCTTTGGTAACAAAATCTCTACACAGACTGGTATTGGAACCGGCATTGCAATTGCAGGAGTAGCACTTTACTCTTACATCAAGGCTAAGATGGAAGAAGAGAAACGAGTTATTGAGATCATTGGAACTTGGGGAGATTTTTTCTTGAATTTTGTGTGGGTTTGGCTGTTCTGTGTTTTTTTCTTCTTCCTTCGATCTTCATCTTCGAATTCCATGGAAGCTGCTGCCTCCGACGGCGAAAATCACAACCAGAATAATGATAATATTAACAAAATTAGTAACTCAAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTTCAGCTTGAAACCCTCGAGAAAGCCTATGCTTTGGAGACTTACCCATCTGAGTCGACAAGGGCTGAACTATCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCATAGGAGGTTGAAGGACAAGAAGGAACCGGCAAAGAAACCCCGGAAGGTGGCACCCGCACCCCCCTTGCCGTTGCCTGATTCTCCCATTGACGAATTGAGAGTAGTGGCCGAGCCGGGTAGTGATTACGCTTCAGGGTCGGGCTCGGGTTCGAGTCCATTTGGTGATGTCGGGTTGCGTAATGTGGTACCTAGAAGTGTTGGAGATGATATGCCGATGATGAGAAGGTATTATGAACCTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTAGGAGAACCATTGAGGGAGGACGGACCTATTCTAGGGATTGAATTTGATCCACTACCACCTGATGCTTTCGGAGCACCTATAGTGGCAGAACAGCAGAAGCGATCTGGACATTCGTATGGGGACAAATATGAACAACGGGATACGAAATCAAATAAAGTGACTGCAAGGGGATTCCCCGAATATCCATTTATGCCAGACCAGTCTAATATTAGAGCTGATGCGTATGGTCCAGTTTCCCAACCACATTATCAAGATTCATTAGGCGAGGTTTCAGCAGCCAGGACACCATCATTTTTGCTTGGTCATGAACAGTTGAACAGGAGCCATAATTACCACAATCAGGGCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAGCAGGGAGTTGCAATTCCATCTCCTGCTGAAGACAATGCATTTGTCCCTCCAAGGGATTCTTTTGCAAGTATCAGAATCAATTCTCAGTTTACTGAACACCCAATTGTTGGACAAGAAAGTTCATATGTGTTGCCTGATGGGCATGTTTTTCCAAACGATGTCATGATTAGGATGGAAAGAAAACGCAAGAGTGAAGAAGCTCGTCTGAGTAAAGAAGCTGAAGCCCACGAAATAAGAATGCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGAGAAAGAATGAAGAACGAATGAGGAAAGAAATGGAAAAGCAAGATCGTGAAAGAAGGAGAGAAGAGGAGAGGTTACTGCGAGAAAAGCAGCGGGAAGCCGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATGTGAGGGCTGAAAAGAGGAAACAAAAAGAAGCTATTCGCAAAGAGAAGGAAGCTGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGACGAACAGCTTGAACTGATGGAACTGGCTGCTGCAAACAAAGGATTACCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTAGGTGCATTTCCACCCAAGTCCGTGCAATTGAAAAAACCTTTCGGCATTCAACCTTGGATCAATTCAGAGGAGAACATCGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTGTGGCCCTTCACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTACTGGGTGAGATTCACATTTGCCTTTTGAGACTGATTGTAAAAGATATTGAAGATGTTGCAAGAACACCTTCTGCTGGAATGGGAATGAACCAGAATGGTGTTGCCAACTCTGGAGGTGGACACCCACAGATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAGCATCTAAACCCGTTAACATGGCCTGAAATATTTCGACAATTAGCACTATCAGCTGGATTTGGACCTCAGTTGAGAAAGAGGAGTTTGGCAATGTCTGAAATGCGTAGCAATGATGAGGCTAAATGCGGTGAGGACGTAGTCTCTACTCTACGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGTTAGCCCCTCGGAGATCTAGGCATCGGCTAACTCCTGGAACTGTGAAATTTGCTGCTTTTCATGTCCTTTCCCTAGAAGGCAGTGAGGGGTTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACAAGCAAGACACCAGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGTGTACGAGCTCCCTATAGGAAGGATCCAGATGATGCCGAGGAAATACTTTCAGTAGCCAGAAAGAAAATTCAGGTGTTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGATGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAGGTTGATGATATAGCGACAACTGCCTTGGTGAATGAAGATATTAGCAAAGGAGATGCTAACTTAGGAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCCTCAAAATGAAATTGCCAAAGATATATCGCCGTTCCCCCTAAGTGGCTCTAAGGACACAAAATATTTAAATATACCTACAGAGCAGTATGCTGCTGTTGATGAGACTACTATTAGCGATCTTGATCAAGAAAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTATTGTCTTGACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGCTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGACAGAGGCTCAGATTGATAAATCTCGCCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCATATAGTGAGCAAGGTGGAAACTGAACTCAATGGTTCCACTATGGATGGTGGGCAAAGCCCTTTTCCTGTTACCGACAATAAGAACAATGAAACAACCCCAAGCACTGCAGAAAACTTTGGTAGTGTGCCTAATGAGAGGGGTACTTTAGTGCCAGATCTTTTCCCAGGCCCAGATAATTTCTTGGCTCAGCAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCATAGAGCTGAAGAAATGTACACATACAGGTCTTTGCCTTTAGGTCGAGATCGTAGGCGTAACCGGTACTGGCAATTTGTTGCATCTTCCTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTATGATGGAAAGTGGAGGCTTATTGATTCTGAAGAGGGTTTTGATGCTCTTTCGTTGGCTTTGGACACACGTGGGATTAGAGAATCACACCTACGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTGCCAATGATATGGTTCGAAGTGGAATTACTCCTAAAAATGAAAATGATGATTCGAGTTCTAGTCCTGATTGCAACACTGGTTTTAACAGTCCTAGCAGTACTGTTTGCGGATTAAATTTGGATACAATGGCAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAACGAAAAGAAGGCTGCATTTAGAAGGTATCAAGACATGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACACTGTGTGCCATGAAATTTGGAGAAAAACGGTGCACTTCAGTGTTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGTCCTTCGTGCCATCAAACTTTTGGCATTAGTGGGAATGATATTAATTTTCTAGAACACATACGTCACTGTGAGAGGGAAAGGAAGTCTAACCCTTTGGATACACACGTTTTAGATGCATGTCTTCCCCTCAAAAGTAGGTTGCTCAAGGCTCTCCTAGCTTTCATTGAGGTACATGTTCCGTTGGAAGCTTTTCAATCATTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCATCATCCATTGAGGAGCTTCTACAGATATTGACCTTGTTTGAAAGTGTAATTAAGCGGGACTTTCTAAAATCAGACTTTACTACAACTGACGAGCATCTGAGCTCATGTTCCATCTCTGGGAATATTATACATGACCCAGCAGATATTGGGTCTGTTCTTACATTACCGTGGATTCCACGGACTAGTGCAGCTGTTGCTTTAAGGCTTTATGAGGTAGATGCATCAATTTATTATATTGGATGTGAGAAACCAGAGCCCGACCAGGATAAGGAAGTTGGAGAACATATAAACTTTTCCAGTAGATATGTCCAGGTTAAGAATGATGAACGGACTAAACTAAACGAGTTGGATTATGATGATCTGATGAAGAATGAAAACTCAGCCGATCCAAAAAGTTTAAGGAACAGCTACAAACGTGGTCGAGGTAGTCGAGATTATGGACGTCGTAGAAAGTGGCAGAAAAAAGTTAATGGATCCAGATCCGGCCGGGTCCGGCAAAATGTCAAGAGTAATGAGAAGATGAATCAAGAACAGAGGGAACTGGGACAAGGAACACAGGTTATGGGTGTACGAGGCCGCCGTACGGTAAGGAAGAGAAGGGCTGAGAAGAGCACTCCAGATGAAGGACTGTTGGGGCTGGTGCCTGGTAGTAGTACTCAGAACATAGATGAATCCCCAAAAGACTATCTAGGGGAATGGGAGGACGAAAAAATGGATAGGTTCGTCGATATGGAAGATGAAGAGAACGTGATGGAAGATGAAGAAAATGTGATGGAAGATGAGGAGAATGAAGAGAACGTAAACAACGTAGAAGCGATGGACTCCGATGATGATGGCCAGGGAGTTGGGTATGAGCAAGGGGGCTGGGAGTTTGGCTTTGAAGGCACTTCCAACAGATGGAATGGTGATTTAGGGTTGGGTAGCGATGAGGATGTGGATTTATCTGAGGACTACAATGGCACTGAAGAAGGGGGAAATGATGATATAGAGGAGTTAGATGTTGATAGCAGCGAAGAGTCGGATTGTTCACCAAATAGGATAGGCAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGACTATAGTGATTAA 6594 44.02 MESQLLSRATSFAGGIPTLRKLHRDTITNNNHVAFVHTRPIAEGANLIWGRQLRPSLLLDTPHLLSAKRETIRPTFAAASSSSAGGSDSAGEAKVAPVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLISWAVGLPKRAPIDSTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQPIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALLFCIPPAVIVEGPQLLKFGFNDAIAKVGLTKFVSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAGVALYSYIKAKMEEEKRVIEIIGTWGDFFLNFVWVWLFCVFFFFLRSSSSNSMEAAASDGENHNQNNDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVAPAPPLPLPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVVPRSVGDDMPMMRRYYEPSRSVMELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVAEQQKRSGHSYGDKYEQRDTKSNKVTARGFPEYPFMPDQSNIRADAYGPVSQPHYQDSLGEVSAARTPSFLLGHEQLNRSHNYHNQGSRVRLLSQQEKQGVAIPSPAEDNAFVPPRDSFASIRINSQFTEHPIVGQESSYVLPDGHVFPNDVMIRMERKRKSEEARLSKEAEAHEIRMRKELEKQDILRRKNEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYVRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLPSILSLDHDTLQNLESFRDYLGAFPPKSVQLKKPFGIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGMGMNQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLRKRSLAMSEMRSNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEEILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDIATTALVNEDISKGDANLGVENENLCHDIAGNPQNEIAKDISPFPLSGSKDTKYLNIPTEQYAAVDETTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIVLTSIANEGNSIRLVLEDRLEAANAVKKQMLTEAQIDKSRLKEEIITKSDFPIHIVSKVETELNGSTMDGGQSPFPVTDNKNNETTPSTAENFGSVPNERGTLVPDLFPGPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFDALSLALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANDMVRSGITPKNENDDSSSSPDCNTGFNSPSSTVCGLNLDTMATSSSFRIELGRNENEKKAAFRRYQDMQRWMLRECFSTSTLCAMKFGEKRCTSVLDICDSCLCLFDSQHSHCPSCHQTFGISGNDINFLEHIRHCERERKSNPLDTHVLDACLPLKSRLLKALLAFIEVHVPLEAFQSFWTEHRKDWGVRMKLSSSIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSISGNIIHDPADIGSVLTLPWIPRTSAAVALRLYEVDASIYYIGCEKPEPDQDKEVGEHINFSSRYVQVKNDERTKLNELDYDDLMKNENSADPKSLRNSYKRGRGSRDYGRRRKWQKKVNGSRSGRVRQNVKSNEKMNQEQRELGQGTQVMGVRGRRTVRKRRAEKSTPDEGLLGLVPGSSTQNIDESPKDYLGEWEDEKMDRFVDMEDEENVMEDEENVMEDEENEENVNNVEAMDSDDDGQGVGYEQGGWEFGFEGTSNRWNGDLGLGSDEDVDLSEDYNGTEEGGNDDIEELDVDSSEESDCSPNRIGNNGGGESAVSDDYSD 2197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35829773 35848437 - CaPI482276_01g023880.1 Cam01g2388 119470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2388 2197 MobiDBLite consensus disorder prediction 1956 1976 - -
Cam01g2388 2197 Pfam DDT domain 991 1046 IPR018501 -
Cam01g2388 2197 ProSiteProfiles DDT domain profile. 990 1049 IPR018501 -
Cam01g2388 2197 CDD homeodomain 473 528 IPR001356 GO:0003677(InterPro)
Cam01g2388 2197 MobiDBLite consensus disorder prediction 444 475 - -
Cam01g2388 2197 MobiDBLite consensus disorder prediction 1977 1992 - -
Cam01g2388 2197 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1379 1422 IPR028942 -
Cam01g2388 2197 MobiDBLite consensus disorder prediction 2143 2172 - -
Cam01g2388 2197 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1550 1622 IPR028941 -
Cam01g2388 2197 ProSiteProfiles HARE-type HTH domain profile. 1172 1241 IPR007759 GO:0006355(InterPro)
Cam01g2388 2197 MobiDBLite consensus disorder prediction 2086 2197 - -
Cam01g2388 2197 MobiDBLite consensus disorder prediction 651 669 - -
Cam01g2388 2197 Pfam HB1, ASXL, restriction endonuclease HTH domain 1172 1239 IPR007759 GO:0006355(InterPro)
Cam01g2388 2197 SMART HOX_1 470 532 IPR001356 GO:0003677(InterPro)
Cam01g2388 2197 MobiDBLite consensus disorder prediction 526 548 - -
Cam01g2388 2197 MobiDBLite consensus disorder prediction 837 857 - -
Cam01g2388 2197 SUPERFAMILY Multidrug resistance efflux transporter EmrE 325 396 - -
Cam01g2388 2197 MobiDBLite consensus disorder prediction 1956 2060 - -
Cam01g2388 2197 SUPERFAMILY Homeodomain-like 462 528 IPR009057 -
Cam01g2388 2197 Coils Coil 832 910 - -
Cam01g2388 2197 MobiDBLite consensus disorder prediction 1644 1663 - -
Cam01g2388 2197 Pfam Triose-phosphate Transporter family 108 395 IPR004853 -
Cam01g2388 2197 MobiDBLite consensus disorder prediction 444 472 - -
Cam01g2388 2197 Gene3D - 462 538 - -
Cam01g2388 2197 ProSiteProfiles 'Homeobox' domain profile. 468 528 IPR001356 GO:0003677(InterPro)
Cam01g2388 2197 MobiDBLite consensus disorder prediction 2175 2197 - -
Cam01g2388 2197 SUPERFAMILY Multidrug resistance efflux transporter EmrE 151 244 - -
Cam01g2388 2197 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 442 2197 IPR044977 GO:0006357(InterPro)
Cam01g2388 2197 MobiDBLite consensus disorder prediction 2086 2106 - -
Cam01g2388 2197 SMART testlast3 990 1049 IPR018501 -
Cam01g2388 2197 MobiDBLite consensus disorder prediction 647 679 - -
Cam01g2388 2197 Pfam Homeodomain 471 527 IPR001356 GO:0003677(InterPro)
Cam01g2388 2197 Coils Coil 2078 2098 - -
Cam01g2388 2197 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 107 405 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2388 Cam-Chr1:35829773 Cam05g2562 Cam-Chr5:33385121 1.40E-148 dispersed
Cam01g2388 Cam-Chr1:35829773 Cam10g0516 Cam-Chr10:7641485 1.90E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51368 PF03151 TPT 1.60E-108 CL0184 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2388 - - - 0.0