Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2390 ATGCCTTTATGGCCCTTCCTCTTCCTCTTCTGTTTCCCTCTGTTTTCCTTCTCCCTCAACCAAGAGGGTTATGTTCTCTACACCTTTAAGCGCTCCGTTGAGGATCGTAACAATGTCTTCTCCACTTGGCACGAAGCCGACCCCGATCCCTGTTCATGGGATGGCATCACCTGCGACGCCCACCACCACGTTATTTCTGTTGATCTCTCTAGCTCTCGTATTTCTGCTTCTTTCCCTCTTCAACTCTGTAAGCTTCCGCATCTCCTCTACCTTTCTCTTTACAACAATACCTTCCATTCCCTTCTTCCCGCCGGGATTTCCAATTGTAGCAGCCTCGAGTTTCTTGACCTTAGTCAAAATCTCCTGACCGGTCCTCTGCCTCCCTCCATTGCTGATTTGCCCAATATCCGATACTTGGATTTGTCTGGCAACAATTTCTCCGGCGAAATACCACCCTCCTTCGGTTGGTTTCGGAAACTTGAGGCGTTTTCAATTGTTTTGAATCTTGTGAGTGGTACAATTCCTCCGTTTCTTGGTAACATTACTACTCTTAGGATGTTGAATATGTCTTACAACTCGTTTACGCCCGGAAGAATCCCGCCGGAGCTGGGTAGTCTGGTGAATCTTGAGGTTCTTTGGTTGACGGCTTGTAACTTAGTGGGGGAGATTCCTGAGTCGCTGATAGGTCTGGAGCAACTTGTTCTTCTAGATTTGAGCATTAACAATCTTACTGGGCCGTTCCCGCGGGCGCTGACGGAGTTAACCCACGTGACCCAGATTGAGTTATTTGGCAATAAGTTAACCGGCGTGTTACCGAATGAGTTTTCGAAACTCAAGTCGCTGCGGTTGTTCGACATCTCGATGAATAATCTCGCTGGGCCAATTCCGGGTAGCTTGTTTGAGTTGCCGCTTGAAAGTCTTAATGCGTTTGAGAATAATTTCGAGGGGAGCTTGCCGGAAAGCATAGGGGAGTCGAGGACTTTGAGAGAGATAAAGCTATTTGCGAACAGATTCACTGGGTCGTTACCAACACATTTGGGGAAATATTCACCTCTAGAATCGTTGGACATTTCGGACAACTTCTTTTCCGGCAGGCTCCCCGAGAACTTGTGTGAGAAGGGGGCATTGATAGAGATAATGTTGATCAACAACCTGTTTTCCGGCGAACTCCCGTCGAGTCTTGGTAATTGTCAGAGTCTGACCAGGATGCGATTAGGGAACAACAATTTTACGGGTTCTGTACCAGAAAATGTATGGGGACTTTCAGATGTTGCTCTTATGGAACTTGCAAACAACTCCTTCTCTGGCCCAATCTCAAAGAAAATAGCCAACGCCAAGATGCTGAATTTGCTTCTTATTTCTAATAACAATTTCTCAGGAACAATTCCAGAGGAGATTGGTTCTTTGGAGAATATGGTAGAGTTTTCCGCCGACCATAACAAGTTCATAGGAAATATCCCTGAAAACCTTACAAAAATGGATCGACTTGCTAAGTTAGATCTTCAAAACAACAGACTTTCGGGGTTGCTCAACTACAGGCTTGATGCCTGGGAGAGGCTGAATGAGCTCAATCTGGCCAATAATAACTTCTCTGGGCCAATTCCCCCGGAAATTGCTAGCTTGCCAGTGCTTAATTACCTCGATCTTTCAGGCAATCAATTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAATGTTCTGAATCTGTCATACAACCAATTAACTGGGACACTTCCTTCCTATTTCGAGAGATCAATGTACAAAAATAGCTTTCTAGGCAATCCTGATTTATGTAGGGAGGAAAACGATGCGTGTCATACAGTTCAGTCTACAAGAAATGGAGGAGGAGGAGGAGGTTGTGATGAGGGAGGAGGTTGCATTTGGCTGCTGCGATCCGTCTTTGTATTTGCAGGTTTAATTTTCTTTGTGGGAGTGGTTCTATTCCACGTCAAGTACAGGACATTCGTCAAGGCAAGAAGTCTCAACATCAAATCAAAATGGACAATGATATCGTTCCAAAAGCTCTCTTTTGGTGAGGACGAGATTGTGGGTTCCCTAGATGAACACAATGTGATAGGCAGTGGAGGCTCTGGCCTAGTTTACAAGGTTGCTCTCGCCAATGGCGAAACCATTGCAGTTAAGAAACTTTGGCCCGAGCTGCCCAATGACTGCCCGAGCATCGATCTGGAGAAAAATTGGACTGAAATTAATGCTTTTGATGCAGAAGTGAAGACTTTGGGTGAAATCAGGCACAAAAACATAGTGAAACTTTTGTGTTGTTGTACCAATGGAGACTGCAAGCTTTTGGTCTTTGAATACATGCCTAATGGGAGCTTAGGTGATATGCTTCATGGTAGTAGAAGTGAGTTATTGGATTGGCCAACACGATACAAGATAGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCCCCAATTGTACACAGAGATGTCAAGTCCAATAACATTTTGTTGGATGCTGAATTCGGAGCTAAGATAGCAGATTTTGGAGTAGCTATGGCTGTCGATATATCCCAGGGTAAATCCATGTCAGTGATTGCTGGTTCTTGTGGCTATATTGCCCCAGAGTATGCTTATACATTGAAAGTGAATGAGAAGAGCGACATCTTTAGCTACGGGATGGTTATCCTTGAATTGATAACAGGGAAGCGGCCGATCGACTCCGAGTTCGAAGAAAACGATCTAGTGAAATGGGTATGCACCACTTTAGAAGAAGAAGGCGTTAACCATATTCTAGACCCCAAATTGGATTCGTGTCACCAGGAGGAAATGTTGAAGGTCCTCAACATTGGCCTCCTATGCAGCAGTCCTCTACCTATCAACCGCCCATCCATGAGACGAGTGGTTACAATGTTGTTAGAAGTTCGCACGGATAGCAATTCGAAGATTGGAAGGAGAAAGGGAAGATTGACACCATATTATTTCGAGGATGTTTCGGATAGTGGAAATGTGGTATAG 3003 44.86 MPLWPFLFLFCFPLFSFSLNQEGYVLYTFKRSVEDRNNVFSTWHEADPDPCSWDGITCDAHHHVISVDLSSSRISASFPLQLCKLPHLLYLSLYNNTFHSLLPAGISNCSSLEFLDLSQNLLTGPLPPSIADLPNIRYLDLSGNNFSGEIPPSFGWFRKLEAFSIVLNLVSGTIPPFLGNITTLRMLNMSYNSFTPGRIPPELGSLVNLEVLWLTACNLVGEIPESLIGLEQLVLLDLSINNLTGPFPRALTELTHVTQIELFGNKLTGVLPNEFSKLKSLRLFDISMNNLAGPIPGSLFELPLESLNAFENNFEGSLPESIGESRTLREIKLFANRFTGSLPTHLGKYSPLESLDISDNFFSGRLPENLCEKGALIEIMLINNLFSGELPSSLGNCQSLTRMRLGNNNFTGSVPENVWGLSDVALMELANNSFSGPISKKIANAKMLNLLLISNNNFSGTIPEEIGSLENMVEFSADHNKFIGNIPENLTKMDRLAKLDLQNNRLSGLLNYRLDAWERLNELNLANNNFSGPIPPEIASLPVLNYLDLSGNQFSGEIPNGLQNLNLNVLNLSYNQLTGTLPSYFERSMYKNSFLGNPDLCREENDACHTVQSTRNGGGGGGCDEGGGCIWLLRSVFVFAGLIFFVGVVLFHVKYRTFVKARSLNIKSKWTMISFQKLSFGEDEIVGSLDEHNVIGSGGSGLVYKVALANGETIAVKKLWPELPNDCPSIDLEKNWTEINAFDAEVKTLGEIRHKNIVKLLCCCTNGDCKLLVFEYMPNGSLGDMLHGSRSELLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDAEFGAKIADFGVAMAVDISQGKSMSVIAGSCGYIAPEYAYTLKVNEKSDIFSYGMVILELITGKRPIDSEFEENDLVKWVCTTLEEEGVNHILDPKLDSCHQEEMLKVLNIGLLCSSPLPINRPSMRRVVTMLLEVRTDSNSKIGRRKGRLTPYYFEDVSDSGNVV 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35856006 35859194 + CaPI482276_01g023900.1 Cam01g2390 119472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2390 1000 PANTHER OS04G0122200 PROTEIN 478 967 IPR051809 -
Cam01g2390 1000 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524(InterPro)
Cam01g2390 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 777 983 - -
Cam01g2390 1000 SUPERFAMILY Protein kinase-like (PK-like) 685 967 IPR011009 -
Cam01g2390 1000 SMART serkin_6 689 989 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2390 1000 Gene3D Ribonuclease Inhibitor 243 612 IPR032675 -
Cam01g2390 1000 Gene3D Transferase(Phosphotransferase) domain 1 777 987 - -
Cam01g2390 1000 FunFam Receptor-like protein kinase HSL1 303 610 - -
Cam01g2390 1000 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Cam01g2390 1000 Gene3D Ribonuclease Inhibitor 168 242 IPR032675 -
Cam01g2390 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 179 270 - -
Cam01g2390 1000 Pfam Leucine Rich Repeat 208 229 IPR001611 GO:0005515(InterPro)
Cam01g2390 1000 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515(InterPro)
Cam01g2390 1000 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515(InterPro)
Cam01g2390 1000 Pfam Leucine Rich Repeat 448 469 IPR001611 GO:0005515(InterPro)
Cam01g2390 1000 Pfam Protein kinase domain 691 943 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2390 1000 SUPERFAMILY L domain-like 42 301 - -
Cam01g2390 1000 Pfam Leucine Rich repeats (2 copies) 111 151 IPR025875 -
Cam01g2390 1000 ProSiteProfiles Protein kinase domain profile. 689 968 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2390 1000 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515(InterPro)
Cam01g2390 1000 SMART LRR_typ_2 254 277 IPR003591 -
Cam01g2390 1000 SMART LRR_typ_2 206 230 IPR003591 -
Cam01g2390 1000 SMART LRR_typ_2 85 109 IPR003591 -
Cam01g2390 1000 SMART LRR_typ_2 493 516 IPR003591 -
Cam01g2390 1000 SMART LRR_typ_2 133 157 IPR003591 -
Cam01g2390 1000 SMART LRR_typ_2 541 564 IPR003591 -
Cam01g2390 1000 SMART LRR_typ_2 278 302 IPR003591 -
Cam01g2390 1000 Gene3D Phosphorylase Kinase; domain 1 668 776 - -
Cam01g2390 1000 Gene3D Ribonuclease Inhibitor 18 167 IPR032675 -
Cam01g2390 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 178 - -
Cam01g2390 1000 SUPERFAMILY L domain-like 304 605 - -
Cam01g2390 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2390 Cam-Chr1:35856006 Cam02g0250 Cam-Chr2:3377187 9.50E-132 dispersed
Cam06g1901 Cam-Chr6:29999679 Cam01g2390 Cam-Chr1:35856006 1.40E-51 transposed
Cam01g2390 Cam-Chr1:35856006 Cam03g0640 Cam-Chr3:7257531 8.00E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84924 PF00069 Pkinase 3.90E-41 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2390 - - - 0.0