Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2396 ATGGGTGCTCTCATCGATCTCAATACTACTGAAGAAGATGAATCTCCCTCTTCTGCTGGTTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTAACCTCCTCTCCTTCACCTTCTGTTACTTCCTCAATTTGCTTGGAGCTATGGCATGCTTGTGCTGGACCTCTCACCTCTTTGCCCAAGAAAGGGAGCTTGGTTGTGTATTTGCCGCAGGGTCACTTCGAGCTGATTCAAGAATTTCCGGCTACGCCTTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCATGCTGAAGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCTTTGTTTCCTGAAAACGAGAAAATGGAGCACAAGATGCAGGAAGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGAAGGTGAGAAGACTACAACACCCCACATGTTCTGCAAGACCCTTACCGCTTCTGACACCAGTACTCATGGAGGCTTTTCCGTCCCTAGACGTGCAGCTGAGGATTGCTTCCCACCATTGGATTATAATCAACAGAGGCCTTCACAAGAGCTCGTAGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCTTTCGTGAACAAGAAAAGGCTTGTTTCTGGAGATGCAGTGCTTTTTCTTAGGGGCAACGATGGTGAATTAAGACTGGGAATTCGAAGAGCTGCACAGCTTAAAAATGGTTCTGCCTTTTCCAATATTTGCAGTCAGCAGCTCAACTCTAGTAGTGTCATGGATGTGGTTAATGCGATATCTACAAAAAGTTCCTTTAGTGTATACTACAATCCCAGGGCTACCTCTTCACAGTTTGTCTTACCCTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAAACCGAAGATGCTGCAGATCGAAGACATTCTGGACATATAACTGGAGTTGGCGATGTGGATCCTATCAGATGGCCAGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAACTAACAGGCATGGCAGGGTTTCCCCTTGGGAGATTGAGCCCTCTGGTTCTGTCTCTTTGTCTAGCAACTTGGTTCCACCTGGTCTGAAAAGAACCAGGATTGGGCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGACGGTGAGGAAAACAATCGTAATCCACCCGAAAAGAGGAGATTGTTTCCTGGTTTACATGGTTCTGGGATAGCTTTGATGAGAAATGGTCCAAGAATCCCACTTATTAACTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTTCAATACCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCCTTTTATGGCAGGTCCATGGCCACCAATGAAGTTAAGGCAAGTGGTGGTTGTGGCCCTGTCGATGGCATTCGATTATCTAGGACTAAAGATGGATGGCCCATGACAATGCAATGTGAAAATTTCCTCACACGGTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCTGTATTAATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCACATAACCGTGTTGCAGAACAGAGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATCACTAACCATAGCTCGAATACTGAAGTCAACCCACAAGGCATGTGTCCCACTTCATTGGGCGAGCAGAATCACCTCGGCCTATCACATCCTTCAACAACAACAGCACCAGCAGCATTTACAGGCAGTAAAGATCTATCTTCAACTTGCAAACCTGGCTGTAGATTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGACAAGGCTTCTCCAGCAACAACTTCCAATAATGCAGGAACAACCACTGTTTTGTCCAATGTTGGAGTACAATGTCCTTTGAAGTCTCCTCTCATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTTTTCAGTACCACTTTGCAAATTACAGTACCTACTACTGA 2187 45.13 MGALIDLNTTEEDESPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYLPQGHFELIQEFPATPYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEKMEHKMQEEMNNDSEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKNGSAFSNICSQQLNSSSVMDVVNAISTKSSFSVYYNPRATSSQFVLPFHKFLKSINHSFSVGMRFRLSFETEDAADRRHSGHITGVGDVDPIRWPGSRWRSLMVRWDDGETNRHGRVSPWEIEPSGSVSLSSNLVPPGLKRTRIGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGEENNRNPPEKRRLFPGLHGSGIALMRNGPRIPLINSETSSRGIVFDESFQYHKVLQGQEIFPSPFYGRSMATNEVKASGGCGPVDGIRLSRTKDGWPMTMQCENFLTRSSIPSVQVSSPSSVLMFQQSMVPVQSFNSHNRVAEQRIMNKSTSHNSGTAFITNHSSNTEVNPQGMCPTSLGEQNHLGLSHPSTTTAPAAFTGSKDLSSTCKPGCRLFGFSLTEEKNVGNTDKASPATTSNNAGTTTVLSNVGVQCPLKSPLMSKVVGSNCTKGAFQYHFANYSTYY 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35898574 35902922 - CaPI482276_01g023960.1 Cam01g2396 119478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2396 728 MobiDBLite consensus disorder prediction 1 36 - -
Cam01g2396 728 FunFam Auxin response factor 148 252 - -
Cam01g2396 728 SUPERFAMILY DNA-binding pseudobarrel domain 145 260 IPR015300 -
Cam01g2396 728 Gene3D - 313 387 - -
Cam01g2396 728 Pfam Auxin response factor 276 357 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam01g2396 728 MobiDBLite consensus disorder prediction 10 36 - -
Cam01g2396 728 Gene3D - 148 252 IPR015300 -
Cam01g2396 728 CDD B3_DNA 148 250 IPR003340 GO:0003677(InterPro)
Cam01g2396 728 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677(InterPro)
Cam01g2396 728 FunFam Auxin response factor 313 384 - -
Cam01g2396 728 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 680 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam01g2396 728 SMART B3_2 150 252 IPR003340 GO:0003677(InterPro)
Cam01g2396 728 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2396 Cam-Chr1:35898574 Cam02g2172 Cam-Chr2:34465835 2.70E-128 dispersed
Cam01g2396 Cam-Chr1:35898574 Cam09g0937 Cam-Chr9:9621923 3.00E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51370 PF02362 B3 1.60E-21 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2396 K14486 - csv:101220018 1301.58