Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2430 ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGCACTATGATTCATTTACAGACAAGAAAAGTGAAGGAGGAACCGGAGAAAGGCGGCGGCGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCTGGCCGCCGGAGAACCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATGCGGTGGAAGGGTGGCGTCTCACGTTGGCGGAACAGGATTTTAGCTCGGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 507 49.51 MAEVHSSNTDGIKLFGTMIHLQTRKVKEEPEKGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDAVEGWRLTLAEQDFSSVFPFKRRKIIGQHGQTS 168
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 36157653 36158159 - CaPI482276_01g024300.1 Cam01g2430 119512
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2430 168 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam01g2430 168 MobiDBLite consensus disorder prediction 23 44 - -
Cam01g2430 168 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam01g2430 168 PANTHER CYCLIC DOF FACTOR 2 26 110 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Cam01g2430 168 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2430 Cam-Chr1:36157653 Cam10g1567 Cam-Chr10:29386794 2.70E-31 dispersed
Cam01g2430 Cam-Chr1:36157653 Cam03g0662 Cam-Chr3:7479364 9.00E-43 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51375 PF02701 zf-Dof 1.60E-31 No_clan Cam TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2430 - - - 0.0