Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam01g2430 | ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGCACTATGATTCATTTACAGACAAGAAAAGTGAAGGAGGAACCGGAGAAAGGCGGCGGCGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCTGGCCGCCGGAGAACCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATGCGGTGGAAGGGTGGCGTCTCACGTTGGCGGAACAGGATTTTAGCTCGGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA | 507 | 49.51 | MAEVHSSNTDGIKLFGTMIHLQTRKVKEEPEKGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDAVEGWRLTLAEQDFSSVFPFKRRKIIGQHGQTS | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 36157653 | 36158159 | - | CaPI482276_01g024300.1 | Cam01g2430 | 119512 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam01g2430 | 168 | ProSitePatterns | Zinc finger Dof-type signature. | 51 | 87 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cam01g2430 | 168 | MobiDBLite | consensus disorder prediction | 23 | 44 | - | - | |
| Cam01g2430 | 168 | ProSiteProfiles | Zinc finger Dof-type profile. | 49 | 103 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cam01g2430 | 168 | PANTHER | CYCLIC DOF FACTOR 2 | 26 | 110 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro) | |
| Cam01g2430 | 168 | Pfam | Dof domain, zinc finger | 47 | 102 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g2430 | Cam-Chr1:36157653 | Cam10g1567 | Cam-Chr10:29386794 | 2.70E-31 | dispersed | |
| Cam01g2430 | Cam-Chr1:36157653 | Cam03g0662 | Cam-Chr3:7479364 | 9.00E-43 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51375 | PF02701 | zf-Dof | 1.60E-31 | No_clan | Cam | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam01g2430 | - | - | - | 0.0 |