Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2440 ATGGCCGACGATAAGGTACCTTATACCCATCCTTTTTGTTTTTCTTCTTTTCTTCCTGGATTTCAATGTTGGGTTTCTGGGGTTTGGGTTAATGGGCCAGATTACTCGGAGAATGTATCTACATTAAAGCATTGCTTGTACTCTTCGGGTTCTCCCGTTTCGTCTGTTCTGTTCTTGCGTTTTCTTAGCGATGATTTTGTTTCTGCAGACTTTCTTGGCTGTATTTGTTTCAATTTCTGTATAGCTTCCGAGAGTTCCAATCATCCAATTGATTCCTTTCAACCTCATAACACAGTGTATACTTTGCAGGAAATGTCAGCCCCTGTCATTGATGGAAATGATCCAGTTACGGGTCACATAATATCCACGACTATTGGAGGCAAGAATGGGGAGCCCAAACAGACCATAAGCTACATGGCAGAACGTGTTGTTGGGACTGGATCATTTGGTATTGTTTTCAAGGCCAAATGCTTGGAAACGGGTGAAAATGTGGCTATAAAGAAGGTTTTGCAGGACAGAAGATATAAGAACCGTGAACTCCAGTTAATGCGTGTGATGGATCATCCAAATGTCATTTCCTTAAAGCATTGTTTCTTTTCCACTACTACAAAAGACGAACTTTTTCTCAACTTGGTAATGGAATATGTCCCTGAAACTATGTTTCGGGTTTTGAAGCATTACAGTAACGCAAATCAAAGAATGCCAATCATCTATGTCAAATTATACATGTACCAGGTTTTTAGGGGCCTGGCCTATATCCACACAGTTCCTGGAGTTTGTCACCGAGATTTGAAGCCTCAAAATATTTTGGTGGATCCCCTTACTCACCAAGTTAAAATATGCGATTTTGGAAGTGCAAAAATGCTTATGAAAGGTGAAGCCAATGTTTCATACATATGTTCACGCTTCTATAGAGCACCAGAACTCATCTTTGGAGCTACAGAGTACACAACTTCAATAGATATTTGGTCTGCTGGCTGTGTCCTTGCAGAGCTACTTTTGGGACAGCCTTTGTTTCCCGGAGAAAATGCAGTGGACCAGCTTGTAGAGATTATTAAGGTTCTTGGCACACCAACTCGTGAAGAAATTCGATGTATGAATCCAAGTTATACAGACTATAGGTTTCCACAGATAAAAGCTCACCCATGGCACAAGGTTTTCCACAAACGGATGCCTCCCGAGGCAATTGATCTGGCTTCTCGCTTGCTTCAGTATTCACCCAGTCTTCGCTGCACAGCACTGGAAGCTTGCACACATCCTTTCTTTGACGAACTTAGAGAACCCAATGCTCGTCTCCCCAATGGTCGACCATTCCCACCCCTCTTTAATTTTAAACAAGAGCTGTCAGGTGCCTCTCCAGAGCTCGTTAACAAGTTGATACCTGATCAAGTGAAACGACAAATGGGTCTTAATTTGCATCTAGCAGTTTCTCATTTGTCTCCCAAAGGAGTAAACTATGAAGTGGCGGCTTTGATATCAGTGAAGAGTAGGATGAGGGACGAGCGGGGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGAGCTTTGTGATTTCTCTGTTGTTGCAAAATAATGAGTTATCTGGTCCAATCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGCGGGATTCCAAGTTCTTTGGGGTTTCTCACTCATTTAAATTACTTGAAGCTCAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTCTCCTTTCTATCTCATCTTGTCTTCACATCCTACGTGCAACAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAATCTCTTGCGTCTGTATGGCTTTTGTATGACGCCAGATGAGAGATTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGTGCAGCTCGTGGACTCCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTCGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGCAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAAAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAACTTAGACCAAAGATGTCCGAGATCCTGAAGATTCTAGAAGGTCTCGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAAGTCTTTATGGGGATAGAACTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTTGTTGAAGCCATGGAGCTTTCCGGACCTCGATGA 2889 42.47 MADDKVPYTHPFCFSSFLPGFQCWVSGVWVNGPDYSENVSTLKHCLYSSGSPVSSVLFLRFLSDDFVSADFLGCICFNFCIASESSNHPIDSFQPHNTVYTLQEMSAPVIDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFKAKCLETGENVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTTKDELFLNLVMEYVPETMFRVLKHYSNANQRMPIIYVKLYMYQVFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKMLMKGEANVSYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPSYTDYRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACTHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDQVKRQMGLNLHLAVSHLSPKGVNYEVAALISVKSRMRDERGVMQGWDINSVDPCTWNMVACSAESFVISLLLQNNELSGPIPDDIGELSELQTLDLSNNQFVGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKILEGLVGQSSQMEESPGGASLYGDRTHSFSRNYSDIHEESSFVVEAMELSGPR 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36237602 36246956 + CaPI482276_01g024400.1 Cam01g2440 119522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2440 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 761 773 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2440 962 SUPERFAMILY L domain-like 486 605 - -
Cam01g2440 962 ProSitePatterns Protein kinases ATP-binding region signature. 645 667 IPR017441 GO:0005524(InterPro)
Cam01g2440 962 Gene3D Transferase(Phosphotransferase) domain 1 218 465 - -
Cam01g2440 962 FunFam Somatic embryogenesis receptor-like kinase 1 715 926 - -
Cam01g2440 962 Gene3D Transferase(Phosphotransferase) domain 1 715 923 - -
Cam01g2440 962 CDD STKc_GSK3 133 425 IPR039192 -
Cam01g2440 962 SUPERFAMILY Protein kinase-like (PK-like) 137 446 IPR011009 -
Cam01g2440 962 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 108 466 IPR050591 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam01g2440 962 FunFam Shaggy-related protein kinase kappa 218 465 - -
Cam01g2440 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2440 962 ProSiteProfiles Protein kinase domain profile. 138 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2440 962 ProSitePatterns Protein kinases ATP-binding region signature. 144 168 IPR017441 GO:0005524(InterPro)
Cam01g2440 962 Gene3D Ribonuclease Inhibitor 486 603 IPR032675 -
Cam01g2440 962 Pfam Protein kinase domain 642 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2440 962 Pfam Protein kinase domain 138 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2440 962 FunFam Leucine-rich repeat receptor-like kinase 486 604 - -
Cam01g2440 962 Gene3D Phosphorylase Kinase; domain 1 609 714 - -
Cam01g2440 962 FunFam Glycogen synthase kinase-3 beta 122 217 - -
Cam01g2440 962 SUPERFAMILY Protein kinase-like (PK-like) 621 912 IPR011009 -
Cam01g2440 962 SMART serkin_6 138 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2440 962 SMART serkin_6 639 910 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2440 962 Pfam Leucine rich repeat N-terminal domain 485 524 IPR013210 -
Cam01g2440 962 Gene3D Phosphorylase Kinase; domain 1 123 217 - -
Cam01g2440 962 FunFam Somatic embryogenesis receptor kinase 1 608 714 - -
Cam01g2440 962 ProSiteProfiles Protein kinase domain profile. 639 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2440 962 Pfam Leucine Rich Repeat 553 574 IPR001611 GO:0005515(InterPro)
Cam01g2440 962 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2440 Cam-Chr1:36237602 Cam02g1849 Cam-Chr2:31544200 3.00E-199 dispersed
Cam11g1918 Cam-Chr11:31614992 Cam01g2440 Cam-Chr1:36237602 1.50E-43 dispersed
Cam01g0752 Cam-Chr1:8320005 Cam01g2440 Cam-Chr1:36237602 6.50E-123 transposed
Cam08g2255 Cam-Chr8:27668121 Cam01g2440 Cam-Chr1:36237602 3.90E-136 transposed
Cam11g0535 Cam-Chr11:6812927 Cam01g2440 Cam-Chr1:36237602 5.10E-129 transposed
Cam01g2440 Cam-Chr1:36237602 Cam07g0267 Cam-Chr7:3743464 3.40E-195 wgd
Cam01g2440 Cam-Chr1:36237602 Cam07g1057 Cam-Chr7:24920524 1.50E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84927 PF00069 Pkinase 9.60E-65 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2440 K14502 - csv:101218118 806.208