Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2459 ATGGCTGAGATTTCAGGATCAAGCAATGGACATCACACTGTTTCTTTGAACGTCAAAGATGAATCCACAGCCGTCACCAGCAGAGAAGTAGCAGCTGACTGGCTTTCTGTACCTTTCATTCAAAAGTTGATCGCAGAGATTGTGGGGACATATTTCTTGATATTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTGATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTAGTTGTAATGGTGATGGTTTATTCTGTTGGTCATATCTCTGGTGCTCATTTCAACCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAGCTGGGACACTTAGGCTAATATTTAATGGACACCAAGATCATTTCTCGGGGACCCTCCCAAGTGACTCATATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTAGTGTCTGGTGTTGCCACTGATAATAGAGCTATTGGTGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATCAAGGCAGTTCAAAGGGTTGTGGATTTACATGGTAGCTCCCATTTTTGGGGCAATTTCAGGTGCTTTGGTTTACAATACCATCAGGTTCACAGACAAGCCTCTAAGAGAGATCACTAAAAGTGCCTCTTTCCTTAAAGGACAAAGTCGCAATGGTTCGTCTTGA 831 43.44 MAEISGSSNGHHTVSLNVKDESTAVTSREVAADWLSVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAAGTLRLIFNGHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYMVAPIFGAISGALVYNTIRFTDKPLREITKSASFLKGQSRNGSS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36377652 36379220 + CaPI482276_01g024590.1 Cam01g2459 119541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2459 276 NCBIfam MIP family channel protein 45 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g2459 276 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g2459 276 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g2459 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g2459 276 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g2459 276 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g2459 276 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g2459 276 Pfam Major intrinsic protein 35 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g2459 276 Gene3D Glycerol uptake facilitator protein. 5 262 IPR023271 -
Cam01g2459 276 CDD MIP 41 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g2459 276 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cam01g2459 276 SUPERFAMILY Aquaporin-like 35 261 IPR023271 -
Cam01g2459 276 PANTHER AQUAPORIN NIP2-1 30 255 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2459 Cam-Chr1:36377652 Cam05g1262 Cam-Chr5:12476705 3.00E-80 dispersed
Cam01g2459 Cam-Chr1:36377652 Cam10g2153 Cam-Chr10:35051659 4.30E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2459 K09874 - csv:101219297 508.834