Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2466 ATGAAAAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTAGTCAAGCAGGACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTACTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGTGTGAACATTACCAAGGGAACATTTCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCTGTTACTCAAAGTTGGCCGATGATGATCGTTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAGGAGAAATAAAAACAATGACGGTTGTGAGACTTGCCCTTGATATTGCGAGGGGGATGAATTATTTGCATGAGAACAAGCCAACACCAATTATTCATCGTAATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAAATTTTGGAGTTAGCAAGTTATTGAAAGTTAAAGAAGATACACCTTCGACTCATTCAGAGACTTCACGAAGATATGAAGCTCCCGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGATGTGTTTTCTTTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGGCAGATAGTGAAGTTCCTAAATTGTATGCAGCAGGAGAACGTCCCCCATTTAGAGCATCACTTAAACGTTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGTTGAAGAGAGATCGTTCCCGTCGAAGCAGTTTCAATCTTTCGTCACATTCTTCTGCCAGCAGTATATGA 1377 43.72 MKSPVRFKLGKQSSLAPDGHLEDLEELVKQDQTEEGIDSRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGALLSRKGEIKTMTVVRLALDIARGMNYLHENKPTPIIHRNLEPSNILRDDSGHLKVANFGVSKLLKVKEDTPSTHSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKADSEVPKLYAAGERPPFRASLKRYANGLKELIEECWNEKPNSRPTFRQIITQLEFIYNRFGHKRRWKVRPLKCFQNIEAMLKRDRSRRSSFNLSSHSSASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36405536 36411094 + CaPI482276_01g024660.1 Cam01g2466 119548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2466 458 FunFam Integrin-linked protein kinase family 20 147 - -
Cam01g2466 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 60 410 IPR051681 GO:0004674(PANTHER)
Cam01g2466 458 Pfam Protein tyrosine and serine/threonine kinase 161 409 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2466 458 FunFam Os01g0748600 protein 142 429 - -
Cam01g2466 458 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Cam01g2466 458 SMART ANK_2a 38 67 IPR002110 GO:0005515(InterPro)
Cam01g2466 458 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Cam01g2466 458 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Cam01g2466 458 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Cam01g2466 458 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Cam01g2466 458 CDD STKc_MAP3K-like 162 409 - -
Cam01g2466 458 PIRSF ILK 2 432 - -
Cam01g2466 458 Gene3D Transferase(Phosphotransferase) domain 1 232 454 - -
Cam01g2466 458 SUPERFAMILY Ankyrin repeat 19 132 IPR036770 -
Cam01g2466 458 ProSiteProfiles Protein kinase domain profile. 121 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2466 458 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515(InterPro)
Cam01g2466 458 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Cam01g2466 458 SUPERFAMILY Protein kinase-like (PK-like) 165 413 IPR011009 -
Cam01g2466 458 Gene3D - 14 144 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2466 Cam-Chr1:36405536 Cam09g1398 Cam-Chr9:20645108 3.70E-83 dispersed
Cam01g2466 Cam-Chr1:36405536 Cam02g1897 Cam-Chr2:32010283 7.70E-129 wgd
Cam01g2466 Cam-Chr1:36405536 Cam03g0708 Cam-Chr3:7946365 1.50E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84928 PF07714 PK_Tyr_Ser-Thr 2.20E-53 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2466 - - - 0.0