Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2468 ATGTCCAAGCCTTATCAGTCACCACTCACAAGAATGATTAGGGGAAAAGGAAAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTTTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGCCAAAAGAAAATCTTAGATTCTCACCTTCTGATTGTGCTGCTCATTTCACCTGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCACACTCTGATTGGTGGATTGGATTATATTATAAGGAGTGCTGGCCATTTGCCGATTGAAAGTCTCAACTTTCTCTGA 987 40.93 MSKPYQSPLTRMIRGKGKGDFIKTANSPSFCSVLKVPSSTSSFPHQPKENLRFSPSDCAAHFTCKLQIKGFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALHTLIGGLDYIIRSAGHLPIESLNFL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36419336 36425980 + CaPI482276_01g024680.1 Cam01g2468 119550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2468 328 Gene3D - 98 179 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g2468 328 ProSiteProfiles K-box domain profile. 172 262 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam01g2468 328 ProSitePatterns MADS-box domain signature. 88 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g2468 328 FunFam agamous-like MADS-box protein AGL11 98 181 - -
Cam01g2468 328 PRINTS MADS domain signature 88 108 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g2468 328 PRINTS MADS domain signature 108 123 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g2468 328 PRINTS MADS domain signature 123 144 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g2468 328 CDD MADS_MEF2_like 87 161 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam01g2468 328 PANTHER SERUM RESPONSE FACTOR HOMOLOG 86 281 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam01g2468 328 ProSiteProfiles MADS-box domain profile. 86 146 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g2468 328 Pfam K-box region 168 256 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam01g2468 328 Coils Coil 209 229 - -
Cam01g2468 328 SMART madsneu2 86 145 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g2468 328 SUPERFAMILY SRF-like 87 163 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g2468 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 95 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1867 Cam-Chr1:32204453 Cam01g2468 Cam-Chr1:36419336 8.70E-36 dispersed
Cam01g2468 Cam-Chr1:36419336 Cam08g0041 Cam-Chr8:947872 1.40E-71 dispersed
Cam04g0359 Cam-Chr4:13003660 Cam01g2468 Cam-Chr1:36419336 6.80E-31 transposed
Cam05g2036 Cam-Chr5:29040875 Cam01g2468 Cam-Chr1:36419336 5.50E-25 transposed
Cam10g1463 Cam-Chr10:28309209 Cam01g2468 Cam-Chr1:36419336 1.10E-25 transposed
Cam01g2468 Cam-Chr1:36419336 Cam02g1899 Cam-Chr2:32038619 6.40E-69 wgd
Cam01g2468 Cam-Chr1:36419336 Cam03g0710 Cam-Chr3:7970071 1.10E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51380 PF01486 K-box 5.00E-28 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2468 K09264 - csv:101221430 450.669