Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2492 ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGAGAAGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCAAAGAAGAAAGGAGAGAAGAAAGAGAGAGAAGCGAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTACAGATGTACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCCATTGTAATTACAACCTATGAAGGTCAACACAACCACCCAGTCCCGACAACGCTAAGAGGAAACCTATCAGCGGCGAGCAGCACGTTCTCACCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGTATTGGGTTTCTACCTACAGAGTTGTTGAGTAATTCTTCCAACAACAATAACCAGGCCATCAATGGTGGCGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAATGAGCGACAATCAGAATATGGGCTTCTACAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA 780 42.18 MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKEKDKQIDKEHVEDGGESSKAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPVPTTLRGNLSAASSTFSPSMLAPMPVVGGIGFLPTELLSNSSNNNNQAINGGASVYSHNNFDYTYNERQSEYGLLQDIFPTPSSFFNRQL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36615537 36617074 + CaPI482276_01g024920.1 Cam01g2492 119574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2492 259 FunFam WRKY transcription factor 57 97 171 - -
Cam01g2492 259 SMART WRKY_cls 111 170 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2492 259 MobiDBLite consensus disorder prediction 27 98 - -
Cam01g2492 259 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2492 259 Gene3D WRKY domain 95 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2492 259 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2492 259 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g2492 259 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 211 IPR044810 GO:0003700(InterPro)
Cam01g2492 259 MobiDBLite consensus disorder prediction 27 54 - -
Cam01g2492 259 MobiDBLite consensus disorder prediction 55 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2492 Cam-Chr1:36615537 Cam09g2282 Cam-Chr9:37291313 1.80E-42 dispersed
Cam10g1124 Cam-Chr10:24329911 Cam01g2492 Cam-Chr1:36615537 3.80E-14 dispersed
Cam01g2492 Cam-Chr1:36615537 Cam02g1905 Cam-Chr2:32116765 2.80E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51381 PF03106 WRKY 8.00E-26 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2492 - - - 0.0