Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2494 ATGGCTGCTTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGTCACCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGTGAGCCACCGTCCTACTTGACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTATCTCGCAATGGCGTGAAGTTTGGTGAAGCTGTGTGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGGCTCGACTACTTGGGGAATCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGCATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCTGACCACCTTGCTGATCCAGTCAACAACAATGCCTGGGCCTATGCCACAAACTTTGTTCCTGGAAAGTGA 798 55.76 MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36640626 36641423 - CaPI482276_01g024940.1 Cam01g2494 119576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2494 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cam01g2494 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cam01g2494 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cam01g2494 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cam01g2494 265 MobiDBLite consensus disorder prediction 1 30 - -
Cam01g2494 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2494 Cam-Chr1:36640626 Cam03g0750 Cam-Chr3:8378243 3.00E-149 dispersed
Cam01g2494 Cam-Chr1:36640626 Cam01g2495 Cam-Chr1:36643198 7.50E-153 tandem
Cam02g0291 Cam-Chr2:3687370 Cam01g2494 Cam-Chr1:36640626 9.90E-121 transposed
Cam04g0726 Cam-Chr4:21633734 Cam01g2494 Cam-Chr1:36640626 3.40E-26 transposed
Cam10g0600 Cam-Chr10:9201747 Cam01g2494 Cam-Chr1:36640626 1.00E-96 transposed
Cam10g1500 Cam-Chr10:28771723 Cam01g2494 Cam-Chr1:36640626 1.40E-135 transposed
Cam01g2494 Cam-Chr1:36640626 Cam02g1907 Cam-Chr2:32135436 2.60E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2494 K08912 - csv:101221671 524.628