Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2496 ATGGTAACAATGGCTTCTAGCGTCAGTTTAGCCATTTTCATGATAGCTAGTTTTGTTCTAGTAAGGGTTCTGTCTACCCAACACCAATCCGCCATGGAAGTTGAATTGGAAGCCTTGAAGGCCTTCAAGAGTTGCATCCAGTTCGATCCATTGGGAGCACTTGCAGATTGGACGGACCTTAATCCCCACTGCAATTGGTCTGGCATTATATGTGACCCTGATTCCAAAAGGGTAATTTCGATTACTTTGATTGATCAGCAGCTTGAAGGCGAGATTTCTCCATTTATTGGGAACCTCTCAGCTCTCCAGGTTCTCGATTTAACTCAGAATTCGTTTACCGGGCAGATTCCCGGTGAATTGGGTTCGTGTTCCAACCTTTCTCAGCTCACTCTTTACAGAAACTTTCTTTCAGGTCACATTCCACTCCAGTTGGGAAACCTTGGGTTCCTGCAAGATGTTGATTTGGGAAATAACTTCTTAAAGGGAAGCATTCCTGATAGCATTTGCAATTGCACAAACTTGTTAGCATTTGGTCTAATATTTAATAATCTCACGGGAAGAATCCCATCAAACATAGGAAACTTAGTCGATCTTCAAATTCTGGTTGCATACGCCAACAAGCTTGAAGGTTCCATTCCCATCTCTATTGGCAAACTAGGTGCGCTGCAAACTCTGGATCTTAGCCAGAACAACTTGTCTGGGAATATACCAATGGAGATTGGGAATTTGTTGAATTTGGAGTATATTTCATTGTTTGAGAATGCTTTGGCTGGGAAAATTCCTGAGGAGATAGGTAAATGTGAGAAGCTTCTTTCTTTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAATTAGGCTCTCTGATTCACTTACAAACCTTGCGTCTGTATACAAATAGATTAAATTCCACTATACCACAATCTCTCTTACAGTTGAAAGGTTTAACCCATTTGCTTCTCTCAGAGAACGAGTTAAGTGGAACTGTATCTTCTGATATTGGATCTTTGAGATCATTGCAGGTTTTGACTCTTCACTCGAATAGATTTTTCGGGGTGATTCCTTTGTCTTTGACAAACTTGTCAAACCTCACACATTTGTCTCTGAGCTTCAATTTTTTCACTGGTGAGATTCCGTCCAATTTAGGTCTGCTTTATAATCTGAAGAGATTGACATTGAGCAGCAATCTCCTAGCAGGTTCAATTCCATCTAGTATTATCAATTGCACCCAGCTTTCTATAATTGATCTTTCATTCAATAGGCTGACAGGAAAAATACCTATGGGATACGGGAAGTTGCAGAATCTTACTTCCCTCTTGCTTGGATCAAATAGAATTTTTGGTGAAATCCCAGATGACTTATTTAATTGCTCATCCCTTGAGGTTGTAGACCTGGCTCTAAACAATTTCACTGGATTATTAAAATCCAGTATCGGCAAGCTTTCCAATATTCGAGTTTTCAGAGCCGCATCAAATTCATTTTCTGGGGAAATTCCAGGTGACATTGGCAACTTAAGCAGGCTCAACACTTTAGTACTTGCAGAAAATAAATTTTCAGGTCAAATTCCTGGGGAGTTGTCTAAGCTTTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAGGATTCCTGAAAAAATATTTGATCTGAAACAACTGGTTCATCTTCATCTGCAGAACAACAAGTTCATAGGTCCAATTCCAGATGCCATCTCAAGACTAGAGTTTCTTTCGTATTTGGACCTTCATGGAAACATGCTTAATGGATCAGTTCCTAAAAGTATGAGGAATCTTCATCGACTTGTGATGTTAGATCTGTCCCGCAACCATCTATCTGGATCAATTCCTGGGGTTTTAATCTCAGGTATGAAAGATATGCAACTATACATGAACTTGTCATACAATTTCCTGGTAGGAGCTATTCCAGCTGAGCTTGGGTTGTTGCAAATGATACAATCTATTGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCCATGATCGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATCATCTTTCCGGTATGCTTCCAGGTAAAGCTTTTACCGGAATGAATATGCTCATGAGCTTGAACCTTTCAAGGAACAAAATAGCTGGTGAAATCCCAGAAGAGTTAGCAAATCTGGAGCACTTGTACTATTTGGACCTTTCTCAGAACCAGTTCAATGGCAGAATCCCTCAAAAACTTTCAGCTCTGAAGTATGTTAACCTTTCCTTTAATCAACTAGAAGGTCCTGTTCCAGACACCGGAATATTTCAAAAGATAAATGCTTCAAGCTTGATTGGAAATCCTGCTCTTTGTGGATCCAAGTCCTTCGCTCCTTGTGGAAAGAAGTATTTGCGACATCTATCAAAAAAGACCTTACTAATTCTCATAACCCTTGGATCTATTATTGTAGTCTTAGCTATAATTTTCTTAATTCTAGGCCTCAACCGATATCGTAAGCTTGAGAAATCTAAAAGTATTGAAAATCCTGAACCATCATTGGATTATGCATGTACCCTTAAGAGGTTTGATAAGAAGGATATGGAGATCGCAACAGAATACTTCAGCGATGAAAACATTCTAGGTTCCAGTACTTTAAGCACTGTCTACCGTGGTCAACTAGACAACGGACAGATTGTAGCTGTAAAAAGATTGAATTTGCAATATTTCTCTGCCGAATCGGATGATTACTTCAGTAGAGAAATCAAGATTCTTTGTCAACTCAGACATAGGAATTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAAGCTGAAGGCTATCGTGCTTGAATACATGGAAAATGGGAACTTGGATAGAATAATACATAACCCTGGAACAGATCAAATGAGTTGTTCATTGTCAAAGAGGGTTGATATTTGTGTTTCTGTTGCTAGTGGGATGCAATACCTGCATCATGGATATGATTTTCCCATCATTCACTGCGACTTGAAACCTTCAAACATCCTTCTTGATGGAGACTGGGTAGCCCATGTGAGTGATTTTGGAACTGCTAGAGTGTTGGGGGTGTTGGGGGTGCAAAGCCAAGACACAAGCAGCATTTCCTCTTCAGCAGCTTTTGAAGGCAGTATCGGATATTTGGCTCCAGAGTTTGCATACATGGGGAAAGTGACAACAAAAGTAGATGTGTTCAGTTTTGGTGTAATACTGATGGAATTTCTGACAAAGAAGAGGCCAACTGCCACCATTGAAGCTCATGGACTCCCAATCAGCTTGCAGCAACTGGTAGAGAGAGCTCTAGCAAATGGAAAGGAAGAAGTTAGTCAAGTTTTGGATCCTGTGCTGGTCTTGAATGATTCAAAGGAGCAAGGGAGGTTAGAAGAACTGCTCAAATTAGCACTAAGCTGTACCGCCCCAAATCCTGATAATAGACCTGACATGAATGAAATTCTGCCTATCCTTCTGAAGTTGCGCAGAGATGAATAG 3489 40.18 MVTMASSVSLAIFMIASFVLVRVLSTQHQSAMEVELEALKAFKSCIQFDPLGALADWTDLNPHCNWSGIICDPDSKRVISITLIDQQLEGEISPFIGNLSALQVLDLTQNSFTGQIPGELGSCSNLSQLTLYRNFLSGHIPLQLGNLGFLQDVDLGNNFLKGSIPDSICNCTNLLAFGLIFNNLTGRIPSNIGNLVDLQILVAYANKLEGSIPISIGKLGALQTLDLSQNNLSGNIPMEIGNLLNLEYISLFENALAGKIPEEIGKCEKLLSLELYNNKFSGPIPSQLGSLIHLQTLRLYTNRLNSTIPQSLLQLKGLTHLLLSENELSGTVSSDIGSLRSLQVLTLHSNRFFGVIPLSLTNLSNLTHLSLSFNFFTGEIPSNLGLLYNLKRLTLSSNLLAGSIPSSIINCTQLSIIDLSFNRLTGKIPMGYGKLQNLTSLLLGSNRIFGEIPDDLFNCSSLEVVDLALNNFTGLLKSSIGKLSNIRVFRAASNSFSGEIPGDIGNLSRLNTLVLAENKFSGQIPGELSKLSLLQALSLHDNALEGRIPEKIFDLKQLVHLHLQNNKFIGPIPDAISRLEFLSYLDLHGNMLNGSVPKSMRNLHRLVMLDLSRNHLSGSIPGVLISGMKDMQLYMNLSYNFLVGAIPAELGLLQMIQSIDFSNNNLTGIIPAMIGGCRNLFFLDLSGNHLSGMLPGKAFTGMNMLMSLNLSRNKIAGEIPEELANLEHLYYLDLSQNQFNGRIPQKLSALKYVNLSFNQLEGPVPDTGIFQKINASSLIGNPALCGSKSFAPCGKKYLRHLSKKTLLILITLGSIIVVLAIIFLILGLNRYRKLEKSKSIENPEPSLDYACTLKRFDKKDMEIATEYFSDENILGSSTLSTVYRGQLDNGQIVAVKRLNLQYFSAESDDYFSREIKILCQLRHRNLVKVLGYAWESQKLKAIVLEYMENGNLDRIIHNPGTDQMSCSLSKRVDICVSVASGMQYLHHGYDFPIIHCDLKPSNILLDGDWVAHVSDFGTARVLGVLGVQSQDTSSISSSAAFEGSIGYLAPEFAYMGKVTTKVDVFSFGVILMEFLTKKRPTATIEAHGLPISLQQLVERALANGKEEVSQVLDPVLVLNDSKEQGRLEELLKLALSCTAPNPDNRPDMNEILPILLKLRRDE 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36644535 36648295 - CaPI482276_01g024960.1 Cam01g2496 119578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2496 1162 SMART LRR_typ_2 363 386 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 579 602 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 435 459 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 99 123 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 219 243 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 603 627 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 339 362 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 531 555 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 747 772 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 387 411 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 702 726 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 147 171 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 291 315 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 653 676 IPR003591 -
Cam01g2496 1162 SMART LRR_typ_2 677 701 IPR003591 -
Cam01g2496 1162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 993 1005 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2496 1162 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 187 286 - -
Cam01g2496 1162 SUPERFAMILY Protein kinase-like (PK-like) 845 1155 IPR011009 -
Cam01g2496 1162 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Cam01g2496 1162 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 699 1158 IPR050647 -
Cam01g2496 1162 Pfam Protein kinase domain 869 1152 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2496 1162 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 431 704 - -
Cam01g2496 1162 CDD STKc_IRAK 874 1158 - -
Cam01g2496 1162 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 333 428 - -
Cam01g2496 1162 SUPERFAMILY L domain-like 326 621 - -
Cam01g2496 1162 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 947 1162 - -
Cam01g2496 1162 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 829 946 - -
Cam01g2496 1162 SUPERFAMILY L domain-like 549 792 - -
Cam01g2496 1162 SUPERFAMILY L domain-like 62 357 - -
Cam01g2496 1162 Pfam Leucine rich repeat 557 616 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine rich repeat 635 690 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine rich repeat 694 739 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine Rich Repeat 365 385 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine Rich Repeat 102 123 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine Rich Repeat 150 171 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine Rich Repeat 270 291 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine Rich Repeat 389 411 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine Rich Repeat 222 243 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Pfam Leucine Rich Repeat 437 459 IPR001611 GO:0005515(InterPro)
Cam01g2496 1162 Gene3D Ribonuclease Inhibitor 34 146 IPR032675 -
Cam01g2496 1162 Gene3D Ribonuclease Inhibitor 245 315 IPR032675 -
Cam01g2496 1162 Gene3D Transferase(Phosphotransferase) domain 1 947 1162 - -
Cam01g2496 1162 Gene3D Ribonuclease Inhibitor 316 474 IPR032675 -
Cam01g2496 1162 Gene3D Ribonuclease Inhibitor 701 800 IPR032675 -
Cam01g2496 1162 Gene3D Ribonuclease Inhibitor 475 700 IPR032675 -
Cam01g2496 1162 SMART serkin_6 868 1155 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2496 1162 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 32 186 - -
Cam01g2496 1162 Gene3D Phosphorylase Kinase; domain 1 831 946 - -
Cam01g2496 1162 ProSiteProfiles Protein kinase domain profile. 868 1155 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2496 1162 FunFam Leucine-rich repeat receptor-like protein kinase 705 795 - -
Cam01g2496 1162 Gene3D Ribonuclease Inhibitor 147 239 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2045 Cam-Chr1:33574911 Cam01g2496 Cam-Chr1:36644535 8.50E-09 dispersed
Cam01g2496 Cam-Chr1:36644535 Cam03g0681 Cam-Chr3:7742017 3.60E-58 dispersed
Cam01g2496 Cam-Chr1:36644535 Cam06g1867 Cam-Chr6:29723566 3.40E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84929 PF00069 Pkinase 1.40E-42 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2496 K13420 - csv:101215973 1968.36