Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam01g2506 | ATGGGTCGTGAAGGAAACTTCCCGCCTAAAGAAAACAATTTTCGCGCCAAATCTGAACCCCTTATTGGTAGTGGCCAATCAGAAGCTCTTCGGTCTCTCAATCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGGAGCAAAGCAGAGGAAAGTTAGGGACAAGGAAATGGACGTTGGCGAAGAAATTAGGGCAGCTCATAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGGCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGCCCCAGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGGGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCACCGATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGATTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTATGGAAGAGAGGATGAAGCTGAAGCTGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGACTGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACTGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCTATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATCGATGATCCTCCTTCTGAACCTGTACTCGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATAGCACGGTGCATATGATATCATGA | 2505 | 43.63 | MGREGNFPPKENNFRAKSEPLIGSGQSEALRSLNQGSLSLAVSLRRFVDEGAKQRKVRDKEMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEIMLLLQRLQDDNRVMIADSTVHMIS | 834 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 36698475 | 36703678 | + | CaPI482276_01g025060.1 | Cam01g2506 | 119588 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam01g2506 | 834 | FunFam | DNA helicase | 66 | 165 | - | - | |
| Cam01g2506 | 834 | Pfam | MCM AAA-lid domain | 614 | 697 | IPR041562 | - | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 552 | 562 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 242 | 256 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 688 | 703 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 268 | 280 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 519 | 529 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cam01g2506 | 834 | FunFam | DNA helicase | 196 | 250 | - | - | |
| Cam01g2506 | 834 | Pfam | MCM OB domain | 170 | 300 | IPR033762 | - | |
| Cam01g2506 | 834 | Gene3D | - | 170 | 300 | IPR012340 | - | |
| Cam01g2506 | 834 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 65 | 781 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Cam01g2506 | 834 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 360 | 713 | IPR027417 | - | |
| Cam01g2506 | 834 | ProSiteProfiles | MCM family domain profile. | 350 | 556 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cam01g2506 | 834 | SMART | AAA_5 | 392 | 545 | IPR003593 | GO:0016887(InterPro) | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 530 | 538 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 503 | 515 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 479 | 492 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 451 | 465 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cam01g2506 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 391 | 406 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cam01g2506 | 834 | ProSitePatterns | MCM family signature. | 459 | 467 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cam01g2506 | 834 | SUPERFAMILY | Nucleic acid-binding proteins | 74 | 318 | IPR012340 | - | |
| Cam01g2506 | 834 | Gene3D | - | 196 | 250 | - | - | |
| Cam01g2506 | 834 | Gene3D | - | 332 | 722 | IPR027417 | - | |
| Cam01g2506 | 834 | Coils | Coil | 702 | 728 | - | - | |
| Cam01g2506 | 834 | CDD | MCM3 | 353 | 699 | - | - | |
| Cam01g2506 | 834 | MobiDBLite | consensus disorder prediction | 708 | 759 | - | - | |
| Cam01g2506 | 834 | Pfam | MCM N-terminal domain | 73 | 159 | IPR027925 | - | |
| Cam01g2506 | 834 | Gene3D | - | 65 | 160 | - | - | |
| Cam01g2506 | 834 | MobiDBLite | consensus disorder prediction | 708 | 754 | - | - | |
| Cam01g2506 | 834 | SMART | mcm | 165 | 701 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cam01g2506 | 834 | Pfam | MCM P-loop domain | 338 | 560 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g2506 | Cam-Chr1:36698475 | Cam09g0512 | Cam-Chr9:5215855 | 5.90E-95 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam01g2506 | K02541 | - | csv:101210889 | 1463.74 |