Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2506 ATGGGTCGTGAAGGAAACTTCCCGCCTAAAGAAAACAATTTTCGCGCCAAATCTGAACCCCTTATTGGTAGTGGCCAATCAGAAGCTCTTCGGTCTCTCAATCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGGAGCAAAGCAGAGGAAAGTTAGGGACAAGGAAATGGACGTTGGCGAAGAAATTAGGGCAGCTCATAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGGCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGCCCCAGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGGGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCACCGATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGATTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTATGGAAGAGAGGATGAAGCTGAAGCTGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGACTGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACTGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCTATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATCGATGATCCTCCTTCTGAACCTGTACTCGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATAGCACGGTGCATATGATATCATGA 2505 43.63 MGREGNFPPKENNFRAKSEPLIGSGQSEALRSLNQGSLSLAVSLRRFVDEGAKQRKVRDKEMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEIMLLLQRLQDDNRVMIADSTVHMIS 834
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 36698475 36703678 + CaPI482276_01g025060.1 Cam01g2506 119588
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2506 834 FunFam DNA helicase 66 165 - -
Cam01g2506 834 Pfam MCM AAA-lid domain 614 697 IPR041562 -
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 552 562 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 242 256 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 688 703 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 268 280 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 519 529 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam01g2506 834 FunFam DNA helicase 196 250 - -
Cam01g2506 834 Pfam MCM OB domain 170 300 IPR033762 -
Cam01g2506 834 Gene3D - 170 300 IPR012340 -
Cam01g2506 834 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 65 781 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER)
Cam01g2506 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 713 IPR027417 -
Cam01g2506 834 ProSiteProfiles MCM family domain profile. 350 556 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam01g2506 834 SMART AAA_5 392 545 IPR003593 GO:0016887(InterPro)
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 530 538 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 503 515 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 479 492 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam01g2506 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam01g2506 834 ProSitePatterns MCM family signature. 459 467 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cam01g2506 834 SUPERFAMILY Nucleic acid-binding proteins 74 318 IPR012340 -
Cam01g2506 834 Gene3D - 196 250 - -
Cam01g2506 834 Gene3D - 332 722 IPR027417 -
Cam01g2506 834 Coils Coil 702 728 - -
Cam01g2506 834 CDD MCM3 353 699 - -
Cam01g2506 834 MobiDBLite consensus disorder prediction 708 759 - -
Cam01g2506 834 Pfam MCM N-terminal domain 73 159 IPR027925 -
Cam01g2506 834 Gene3D - 65 160 - -
Cam01g2506 834 MobiDBLite consensus disorder prediction 708 754 - -
Cam01g2506 834 SMART mcm 165 701 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam01g2506 834 Pfam MCM P-loop domain 338 560 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2506 Cam-Chr1:36698475 Cam09g0512 Cam-Chr9:5215855 5.90E-95 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2506 K02541 - csv:101210889 1463.74