Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2547 ATGAAGTCGGCCATTGAAGAGTTGTTCGTTGTTGCCTTCTTGGAAGATACTTTGGTGCTTCAAATTTGTGGGTCAATTTCTTTTTGTTTGTTGGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGGGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTCGATGCCCATATACCGAGTTATCCAAGCTTGCCGCCCCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTACTTTTGTAAAACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTGGACTTTTCTCAGCAGCCACCGGCTCAGGAGTTAATTGCCAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAACGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAAAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTAATGCCCTCGTCCGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGCCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCGTCAGAGTTCATCATACCTCTAGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGCTTTAGAATGCTATTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACTATTACTGGTATCGGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCAATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGCGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCACCTCAGATGTTGCAGCCTCAGCCTCAACCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCTAATGCCAACCATGTAACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACTTGGCCGTCAAAGCGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTTGTTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATCCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTTTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAATTATGTGAATACTGCTGGTAACAACTTCTCTGCCAGTCCAACTGGAACAGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCATCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAATTTGTCAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAGGAAGTGCAGGAGATGGGCAAACGCGGCCTAGAGCTCTTGAACTCGGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAATAGACAGGAATCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA 2829 46.8 MKSAIEELFVVAFLEDTLVLQICGSISFCLLDLTEMRLSTAGFSPQAPEGEGRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPTFMPPQMLQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNQQQQQQQQQQQQQPQQQVFDHQQIPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAILLPPFPGRECSLDQGNPDPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGNNFSASPTGTGTPSNCIEDSGFLQSPENTGQVNPSTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPEEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37060138 37065464 - CaPI482276_01g025470.1 Cam01g2547 119629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2547 942 Gene3D - 326 398 - -
Cam01g2547 942 Pfam Auxin response factor 288 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam01g2547 942 CDD B3_DNA 161 262 IPR003340 GO:0003677(InterPro)
Cam01g2547 942 FunFam Auxin response factor 160 264 - -
Cam01g2547 942 FunFam Auxin response factor 326 398 - -
Cam01g2547 942 Gene3D - 160 263 IPR015300 -
Cam01g2547 942 MobiDBLite consensus disorder prediction 508 584 - -
Cam01g2547 942 MobiDBLite consensus disorder prediction 515 529 - -
Cam01g2547 942 Gene3D - 804 897 - -
Cam01g2547 942 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677(InterPro)
Cam01g2547 942 Pfam AUX/IAA family 802 897 IPR033389 -
Cam01g2547 942 ProSiteProfiles PB1 domain profile. 808 892 IPR053793 -
Cam01g2547 942 MobiDBLite consensus disorder prediction 592 611 - -
Cam01g2547 942 Pfam B3 DNA binding domain 162 264 IPR003340 GO:0003677(InterPro)
Cam01g2547 942 SUPERFAMILY CAD & PB1 domains 799 883 - -
Cam01g2547 942 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 55 899 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam01g2547 942 SUPERFAMILY DNA-binding pseudobarrel domain 147 291 IPR015300 -
Cam01g2547 942 SMART B3_2 162 264 IPR003340 GO:0003677(InterPro)
Cam01g2547 942 MobiDBLite consensus disorder prediction 530 584 - -
Cam01g2547 942 FunFam Auxin response factor 803 897 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2547 Cam-Chr1:37060138 Cam11g0027 Cam-Chr11:1853117 3.80E-13 dispersed
Cam01g0841 Cam-Chr1:9484489 Cam01g2547 Cam-Chr1:37060138 1.50E-170 transposed
Cam01g0843 Cam-Chr1:9502344 Cam01g2547 Cam-Chr1:37060138 1.70E-91 transposed
Cam05g2024 Cam-Chr5:28967162 Cam01g2547 Cam-Chr1:37060138 2.80E-173 transposed
Cam11g0143 Cam-Chr11:3109179 Cam01g2547 Cam-Chr1:37060138 3.20E-173 transposed
Cam11g1167 Cam-Chr11:22822635 Cam01g2547 Cam-Chr1:37060138 1.90E-168 transposed
Cam01g2547 Cam-Chr1:37060138 Cam03g0796 Cam-Chr3:9050713 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51386 PF02309 AUX_IAA 2.10E-07 CL0072 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2547 K14486 - csv:101210406 1675.6