Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2569 ATGAAGGAGAGAGGAGGCTCTCTTGGAGGAGAGAGCCTGCCCGTTTGCTGCAAAAGGTCTATGGCGCTTGTCATGCACAAAGATTCATCGAACAAACAAATGGATTCAAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCGAAGCCTAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCTATCCTTTCTAACATTGAGCCTAAGCAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGAGGAAGGAATCATCTCGCCTCCAGAGCGTAAATAGAAAGTTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATTCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTCGCGATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGCGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATTCTCAAAGATCGCCTTTCATGGTATCGTGACTGCCGCTGTCTTAATGTCTTAAGTGTAATTCCTACGGGAAATGGGGGAACAGTAGAGCTCATATATATGCAGACTTATGCTCCAACGACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTTTGTGAGAGGTCATTATCTACTTCAAGTGGTGGTCCAGCAGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAATACGAGCGTGCGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATCCTTGCTCAGAAAATGACAATTGCTGCATTGCGTCACATTAGACAAATTGCTCAGGAGACTAATGGAGAAATTCAATGTACTGGTGGACGTCAACCAGCTGTACTGAGGACATTTAGTCAAAAACTTTGCAGGGGTTTTAACGATGCTGTCAACGGGTTTGCTGATGATGGTTGGTCACCTATGGGCAGTGATGGTGTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCTGGATCCCAGTACAACACGTCTTTGTATCCCTCTTTTGGCGGAGGAGTGATGTGTGCTAAAGCATCAATGTTGCTTCAGAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCTTACTCTGCTGCAAGTTTAAAAGCCAGTCCGTATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAAGTTATTTTGCCTCTTGCTCCTACTGTGGAGCACGAGGAGTTTTTGGAGGTGGTTCGGTTGGAGGGCCTTGCATTCTCTCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGTGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCCCTACTTCCTTCAGGGTTTCGTGTCATACCGCTGGATCCGAAAACGGATGAGCCTACTGCTGCTAGAACACTGGATTTGGCCTCTACACTTGAAGTTGGTGCCAATGCTGCACGATCTGCTGGTGAAACTGATTTGAGCAGCTACAACCTTCGTTCAGTCTTGACTATTGCTTTCCAGTTCACCTTTGAGAATCACTTACAGGAAAATGTGGCTGCTATGGCTCGACAATATGTTCGTAGTGTTGTTGGGTCAGTTCAGAGGGTTGCCATGGCCATTTCCCCTTCGCGGTTGAGTTCCAGTACGGGACTTAAGCCTCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGTTGAACTCCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGAAGCTCTGGCACCACTCCGACGCAATCATGTGTTGCTCTGTTAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTGGACAAAATTCTCGATGAGGCGGGTCGGAAGATTCTTTGCTCTGAGTTCCCCAAAATAATGCAGCAGGGGTTCACAAATCTTCCCTCGGGCATTTGCATATCCAGCATGGGCCGTCCCATTTCTTATGAGCAAGCCATTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTAGCTTTCATGTTCATCAACTGGTCCTTTGTTTGA 2604 47.04 MKERGGSLGGESLPVCCKRSMALVMHKDSSNKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDVNNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTVELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLSTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQCTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGVEDVTIVINSSANKFPGSQYNTSLYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAISPSRLSSSTGLKPLPGSPEALTLARWICRSYRIHVGVELLQADSQSGDAMLKKLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFTNLPSGICISSMGRPISYEQAIAWKVLNDDDSNHCLAFMFINWSFV 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37337987 37343559 - CaPI482276_01g025690.1 Cam01g2569 119651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2569 867 FunFam Homeobox-leucine zipper protein REVOLUTA 38 93 - -
Cam01g2569 867 SUPERFAMILY Bet v1-like 187 398 - -
Cam01g2569 867 Pfam MEKHLA domain 722 866 IPR013978 -
Cam01g2569 867 CDD START_ArGLABRA2_like 181 397 - -
Cam01g2569 867 Gene3D - 220 405 IPR023393 -
Cam01g2569 867 SMART START_1 186 396 IPR002913 GO:0008289(InterPro)
Cam01g2569 867 SUPERFAMILY Homeodomain-like 37 99 IPR009057 -
Cam01g2569 867 Pfam Homeodomain 38 96 IPR001356 GO:0003677(InterPro)
Cam01g2569 867 SMART HOX_1 35 101 IPR001356 GO:0003677(InterPro)
Cam01g2569 867 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 32 867 IPR044830 GO:0003700(InterPro)
Cam01g2569 867 ProSiteProfiles 'Homeobox' domain profile. 33 97 IPR001356 GO:0003677(InterPro)
Cam01g2569 867 CDD bZIP 90 129 - -
Cam01g2569 867 Gene3D - 29 105 - -
Cam01g2569 867 ProSiteProfiles START domain profile. 177 405 IPR002913 GO:0008289(InterPro)
Cam01g2569 867 Pfam START domain 187 394 IPR002913 GO:0008289(InterPro)
Cam01g2569 867 MobiDBLite consensus disorder prediction 143 179 - -
Cam01g2569 867 Coils Coil 103 127 - -
Cam01g2569 867 CDD homeodomain 38 98 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2569 Cam-Chr1:37337987 Cam09g0011 Cam-Chr9:1057928 0.00E+00 dispersed
Cam01g1378 Cam-Chr1:27066925 Cam01g2569 Cam-Chr1:37337987 0.00E+00 transposed
Cam02g2188 Cam-Chr2:34611773 Cam01g2569 Cam-Chr1:37337987 0.00E+00 transposed
Cam01g2569 Cam-Chr1:37337987 Cam03g0818 Cam-Chr3:9533496 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51388 PF01852 START 1.20E-48 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2569 K09338 - csv:101210154 1639.4