Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2570 ATGAGCATTGAACTGGATTTTCTTGGGATATTTGAATTGTCATATAGCTTTGTAAAGATTAGGCCCTTAGTGTTTTTTCAATTAATGGAAGTCAAAGAGCAGACTGTTATAAGATTAAACCCTGATTTGTTAACCATTCAGGTTTCATTTGGTGTGCACTGCAACCCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCGGAATCATTCTTCATCAACCGTAAATGGACTAAGTCAACCCACCATCGCAACTCCAAATCAGTATGTAACATCTCCTCAAGCTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGCACATCTCAACAATCGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTGGATCTAAGTGTTGACAGTTTTCTCTTATTTGCTTGTTCCTGCATTGAAGTAGCAGAAGAAGAAATGAGATTCTGTGGAGTCCCTATCAAAGGGCCATTCCTTGGAAATCAAACACTTTCTTTTGCTCATGGTCCTCTCCTGGTCAAGCCACTCTAA 1005 42.19 MSIELDFLGIFELSYSFVKIRPLVFFQLMEVKEQTVIRLNPDLLTIQVSFGVHCNPMTSSIHDYSDNGEADEQQKYSGSRNHSSSTVNGLSQPTIATPNQYVTSPQAGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARAHLNNRKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPEHPFFLKKPEHLLGLDLSVDSFLLFACSCIEVAEEEMRFCGVPIKGPFLGNQTLSFAHGPLLVKPL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37351303 37359158 - CaPI482276_01g025700.1 Cam01g2570 119652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2570 334 ProSiteProfiles NF-YA/HAP2 family profile. 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 MobiDBLite consensus disorder prediction 77 97 - -
Cam01g2570 334 MobiDBLite consensus disorder prediction 61 97 - -
Cam01g2570 334 Gene3D - 167 221 - -
Cam01g2570 334 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 SMART cbf3 166 223 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cam01g2570 334 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 219 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 66 218 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2570 K08064 - - csv:101205549 244.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2570 Cam-Chr1:37351303 Cam03g1337 Cam-Chr3:27336637 6.00E-22 dispersed
Cam01g2570 Cam-Chr1:37351303 Cam02g2393 Cam-Chr2:36411603 7.00E-23 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g2393 . 74 327 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 8.2e-54 207.6
Cam03g1337 . 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 61.4 5.4e-46 181.8
Cam01g2570 . 57 228 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.0 1.2e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51389 PF02045 CBFB_NFYA 3.60E-21 No_clan Cam TF