Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g2570 | ATGAGCATTGAACTGGATTTTCTTGGGATATTTGAATTGTCATATAGCTTTGTAAAGATTAGGCCCTTAGTGTTTTTTCAATTAATGGAAGTCAAAGAGCAGACTGTTATAAGATTAAACCCTGATTTGTTAACCATTCAGGTTTCATTTGGTGTGCACTGCAACCCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCGGAATCATTCTTCATCAACCGTAAATGGACTAAGTCAACCCACCATCGCAACTCCAAATCAGTATGTAACATCTCCTCAAGCTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGCACATCTCAACAATCGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTGGATCTAAGTGTTGACAGTTTTCTCTTATTTGCTTGTTCCTGCATTGAAGTAGCAGAAGAAGAAATGAGATTCTGTGGAGTCCCTATCAAAGGGCCATTCCTTGGAAATCAAACACTTTCTTTTGCTCATGGTCCTCTCCTGGTCAAGCCACTCTAA | 1005 | 42.19 | MSIELDFLGIFELSYSFVKIRPLVFFQLMEVKEQTVIRLNPDLLTIQVSFGVHCNPMTSSIHDYSDNGEADEQQKYSGSRNHSSSTVNGLSQPTIATPNQYVTSPQAGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARAHLNNRKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPEHPFFLKKPEHLLGLDLSVDSFLLFACSCIEVAEEEMRFCGVPIKGPFLGNQTLSFAHGPLLVKPL | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 37351303 | 37359158 | - | CaPI482276_01g025700.1 | Cam01g2570 | 119652 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g2570 | 334 | ProSiteProfiles | NF-YA/HAP2 family profile. | 167 | 228 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g2570 | 334 | MobiDBLite | consensus disorder prediction | 77 | 97 | - | - | |
Cam01g2570 | 334 | MobiDBLite | consensus disorder prediction | 61 | 97 | - | - | |
Cam01g2570 | 334 | Gene3D | - | 167 | 221 | - | - | |
Cam01g2570 | 334 | PRINTS | CCAAT-binding transcription factor subunit B signature | 201 | 224 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g2570 | 334 | PRINTS | CCAAT-binding transcription factor subunit B signature | 170 | 192 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g2570 | 334 | SMART | cbf3 | 166 | 223 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g2570 | 334 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 172 | 192 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Cam01g2570 | 334 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 169 | 219 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g2570 | 334 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 66 | 218 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g2570 | Cam-Chr1:37351303 | Cam03g1337 | Cam-Chr3:27336637 | 6.00E-22 | dispersed | |
Cam01g2570 | Cam-Chr1:37351303 | Cam02g2393 | Cam-Chr2:36411603 | 7.00E-23 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51389 | PF02045 | CBFB_NFYA | 3.60E-21 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g2570 | K08064 | - | csv:101205549 | 244.973 |