Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2570 ATGAGCATTGAACTGGATTTTCTTGGGATATTTGAATTGTCATATAGCTTTGTAAAGATTAGGCCCTTAGTGTTTTTTCAATTAATGGAAGTCAAAGAGCAGACTGTTATAAGATTAAACCCTGATTTGTTAACCATTCAGGTTTCATTTGGTGTGCACTGCAACCCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCGGAATCATTCTTCATCAACCGTAAATGGACTAAGTCAACCCACCATCGCAACTCCAAATCAGTATGTAACATCTCCTCAAGCTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGCACATCTCAACAATCGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTGGATCTAAGTGTTGACAGTTTTCTCTTATTTGCTTGTTCCTGCATTGAAGTAGCAGAAGAAGAAATGAGATTCTGTGGAGTCCCTATCAAAGGGCCATTCCTTGGAAATCAAACACTTTCTTTTGCTCATGGTCCTCTCCTGGTCAAGCCACTCTAA 1005 42.19 MSIELDFLGIFELSYSFVKIRPLVFFQLMEVKEQTVIRLNPDLLTIQVSFGVHCNPMTSSIHDYSDNGEADEQQKYSGSRNHSSSTVNGLSQPTIATPNQYVTSPQAGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARAHLNNRKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPEHPFFLKKPEHLLGLDLSVDSFLLFACSCIEVAEEEMRFCGVPIKGPFLGNQTLSFAHGPLLVKPL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37351303 37359158 - CaPI482276_01g025700.1 Cam01g2570 119652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2570 334 ProSiteProfiles NF-YA/HAP2 family profile. 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 MobiDBLite consensus disorder prediction 77 97 - -
Cam01g2570 334 MobiDBLite consensus disorder prediction 61 97 - -
Cam01g2570 334 Gene3D - 167 221 - -
Cam01g2570 334 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 SMART cbf3 166 223 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cam01g2570 334 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 219 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g2570 334 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 66 218 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2570 Cam-Chr1:37351303 Cam03g1337 Cam-Chr3:27336637 6.00E-22 dispersed
Cam01g2570 Cam-Chr1:37351303 Cam02g2393 Cam-Chr2:36411603 7.00E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51389 PF02045 CBFB_NFYA 3.60E-21 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2570 K08064 - csv:101205549 244.973