Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2572 ATGAATAATCGCACACTGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGACGCCATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCTACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCAAATCCTTCACAAAAATCACAATCGCAGGAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTGATTAAAGGAACAAACTTAGCTATCAGGGATATGATGTCTAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAAGGTTTTGGAACCATAAAGTTGCAAGTATACGATTATGATACATTTTCAGCAGACGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCCTTGATAACATCCGCCATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCATGATAACGCTCTCATAGCCGATAGCACCGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTTGAATGGATGGCTCTTGAACAATAG 1002 40.32 MNNRTLELGRPGSGKRRLRDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNPSQKSQSQEGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGTIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIADSTVNIVDGKVKQEISLKLQNVESGELDLELEWMALEQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37364803 37368564 + CaPI482276_01g025720.1 Cam01g2572 119654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2572 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cam01g2572 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Cam01g2572 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cam01g2572 333 Gene3D Arf GTPase activating protein 6 135 IPR038508 -
Cam01g2572 333 ProSiteProfiles C2 domain profile. 159 274 IPR000008 -
Cam01g2572 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cam01g2572 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cam01g2572 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Cam01g2572 333 SMART C2_3c 178 273 IPR000008 -
Cam01g2572 333 CDD ArfGap 27 124 - -
Cam01g2572 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cam01g2572 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cam01g2572 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Cam01g2572 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 321 IPR035892 -
Cam01g2572 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cam01g2572 333 CDD C2_ArfGAP 176 320 - -
Cam01g2572 333 Gene3D C2 domain 174 333 IPR035892 -
Cam01g2572 333 Pfam C2 domain 177 265 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2572 Cam-Chr1:37364803 Cam06g1572 Cam-Chr6:27195315 8.00E-35 dispersed
Cam01g0783 Cam-Chr1:8752286 Cam01g2572 Cam-Chr1:37364803 1.80E-91 transposed
Cam01g1537 Cam-Chr1:28929231 Cam01g2572 Cam-Chr1:37364803 1.30E-23 transposed
Cam05g2872 Cam-Chr5:35714469 Cam01g2572 Cam-Chr1:37364803 1.70E-89 transposed
Cam11g1868 Cam-Chr11:31232043 Cam01g2572 Cam-Chr1:37364803 2.60E-24 transposed
Cam01g2572 Cam-Chr1:37364803 Cam03g0819 Cam-Chr3:9546262 4.90E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2572 K12486 - csv:101218116 639.032