Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2578 ATGGTGGCCACCTTAGGGTTTTTGGGAGAGAATATGGTGAAATTGAATGGGGTAGTTTCCAAGGACCCCAAACTTGTAGAAGCCAAGGACTTCTTCTCGAGTGGGTTGCATGTACCGACTAGTATTGTACAAATCCCAGGACTCAACACTCTTGGCATCTCTCATGCTCACCTTGACTTTGTCCCAAACAACATCGTTACTCCTTACACTCACCCTCATGCTGAAGGGGTTGGCAACCCAATAGCGAAAAGGAAATCAAAGCGAGTAAAAATCAAGCTCCCCAAAGAAGCAAAGGAAGAAAATCACAAAACGATCAATAACAACAACGAGGATGAACGAGAGGAGAATTTGGAAGATGAGGGAGGCTCGACACAAATAAAACAACGAGAAGTTATTTATGGATCTCATCTAGTACAAGGCAAAATGAATCATGGAATGGAAGACTATATCGTTACCGAAGAACGACATGTCGACGACCACATGCTGGGACTATTTGCAATATTTGATGGCCACTCCGGTCGCGATGTCACAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAGCCAGTCTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGAGAGCATATAAAGCAACAGATGAGGAGATTTTAGCTAAAAAAGTGGGAAAGAGAGGAGGTTCAACAGCAGTTACAGCTATACTAATAGATGGGCAGAAGCTAATCGTCGCACACGTAGGCGACTCACGGGCGGTGATATGCAGGAATGGCTCAGCAAAACCGATTACGGTCAATCACGAACCAGAGGAGGAGAAGGAGCTTGTTGAGAGCCGAGGCGGATTTGTTGTACAAATGCCAGGAAGTGTGCCACGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGTGATGCAAGGCTGAAAGAACACATTACTTCAGAACCAGATATCAGGATTCTCACAATTGACAATGAGACTGAGTTCACCATTTTGGCCAGTGATGGCCTCTGGAAGGTAATGTCAAACCAGGAGGCTTGTGATTGCATCAGAGAAATGGGAATGGATCCTCAAAAGGCTTCAGAGGAATTGATTAAAGAGGCATTGTCTAAAATGAGCTACGATGACATTTCCTGCGTTGTAGTTACCTTCCACTGA 1143 45.06 MVATLGFLGENMVKLNGVVSKDPKLVEAKDFFSSGLHVPTSIVQIPGLNTLGISHAHLDFVPNNIVTPYTHPHAEGVGNPIAKRKSKRVKIKLPKEAKEENHKTINNNNEDEREENLEDEGGSTQIKQREVIYGSHLVQGKMNHGMEDYIVTEERHVDDHMLGLFAIFDGHSGRDVTEYLQSHLFDNILSQSDFWEDPEGAIRRAYKATDEEILAKKVGKRGGSTAVTAILIDGQKLIVAHVGDSRAVICRNGSAKPITVNHEPEEEKELVESRGGFVVQMPGSVPRVDGQLAMSRAFGDARLKEHITSEPDIRILTIDNETEFTILASDGLWKVMSNQEACDCIREMGMDPQKASEELIKEALSKMSYDDISCVVVTFH 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37414230 37418271 - CaPI482276_01g025780.1 Cam01g2578 119660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2578 380 ProSiteProfiles PPM-type phosphatase domain profile. 132 379 IPR001932 -
Cam01g2578 380 Coils Coil 95 115 - -
Cam01g2578 380 Pfam Protein phosphatase 2C 143 371 IPR001932 -
Cam01g2578 380 MobiDBLite consensus disorder prediction 91 123 - -
Cam01g2578 380 SMART PP2C_4 128 377 IPR001932 -
Cam01g2578 380 PANTHER PROTEIN PHOSPHATASE 109 377 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam01g2578 380 SUPERFAMILY PP2C-like 131 380 IPR036457 -
Cam01g2578 380 Gene3D - 98 380 IPR036457 -
Cam01g2578 380 CDD PP2Cc 131 379 IPR001932 -
Cam01g2578 380 Gene3D Jelly Rolls 2 82 IPR014710 -
Cam01g2578 380 MobiDBLite consensus disorder prediction 92 111 - -
Cam01g2578 380 FunFam Probable protein phosphatase 2C 39 122 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2578 Cam-Chr1:37414230 Cam07g0248 Cam-Chr7:3602918 4.30E-85 dispersed
Cam01g2578 Cam-Chr1:37414230 Cam01g2581 Cam-Chr1:37430613 4.70E-15 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2578 K14803 - csv:101211141 477.248