Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g2578 | ATGGTGGCCACCTTAGGGTTTTTGGGAGAGAATATGGTGAAATTGAATGGGGTAGTTTCCAAGGACCCCAAACTTGTAGAAGCCAAGGACTTCTTCTCGAGTGGGTTGCATGTACCGACTAGTATTGTACAAATCCCAGGACTCAACACTCTTGGCATCTCTCATGCTCACCTTGACTTTGTCCCAAACAACATCGTTACTCCTTACACTCACCCTCATGCTGAAGGGGTTGGCAACCCAATAGCGAAAAGGAAATCAAAGCGAGTAAAAATCAAGCTCCCCAAAGAAGCAAAGGAAGAAAATCACAAAACGATCAATAACAACAACGAGGATGAACGAGAGGAGAATTTGGAAGATGAGGGAGGCTCGACACAAATAAAACAACGAGAAGTTATTTATGGATCTCATCTAGTACAAGGCAAAATGAATCATGGAATGGAAGACTATATCGTTACCGAAGAACGACATGTCGACGACCACATGCTGGGACTATTTGCAATATTTGATGGCCACTCCGGTCGCGATGTCACAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAGCCAGTCTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGAGAGCATATAAAGCAACAGATGAGGAGATTTTAGCTAAAAAAGTGGGAAAGAGAGGAGGTTCAACAGCAGTTACAGCTATACTAATAGATGGGCAGAAGCTAATCGTCGCACACGTAGGCGACTCACGGGCGGTGATATGCAGGAATGGCTCAGCAAAACCGATTACGGTCAATCACGAACCAGAGGAGGAGAAGGAGCTTGTTGAGAGCCGAGGCGGATTTGTTGTACAAATGCCAGGAAGTGTGCCACGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGTGATGCAAGGCTGAAAGAACACATTACTTCAGAACCAGATATCAGGATTCTCACAATTGACAATGAGACTGAGTTCACCATTTTGGCCAGTGATGGCCTCTGGAAGGTAATGTCAAACCAGGAGGCTTGTGATTGCATCAGAGAAATGGGAATGGATCCTCAAAAGGCTTCAGAGGAATTGATTAAAGAGGCATTGTCTAAAATGAGCTACGATGACATTTCCTGCGTTGTAGTTACCTTCCACTGA | 1143 | 45.06 | MVATLGFLGENMVKLNGVVSKDPKLVEAKDFFSSGLHVPTSIVQIPGLNTLGISHAHLDFVPNNIVTPYTHPHAEGVGNPIAKRKSKRVKIKLPKEAKEENHKTINNNNEDEREENLEDEGGSTQIKQREVIYGSHLVQGKMNHGMEDYIVTEERHVDDHMLGLFAIFDGHSGRDVTEYLQSHLFDNILSQSDFWEDPEGAIRRAYKATDEEILAKKVGKRGGSTAVTAILIDGQKLIVAHVGDSRAVICRNGSAKPITVNHEPEEEKELVESRGGFVVQMPGSVPRVDGQLAMSRAFGDARLKEHITSEPDIRILTIDNETEFTILASDGLWKVMSNQEACDCIREMGMDPQKASEELIKEALSKMSYDDISCVVVTFH | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 37414230 | 37418271 | - | CaPI482276_01g025780.1 | Cam01g2578 | 119660 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g2578 | 380 | ProSiteProfiles | PPM-type phosphatase domain profile. | 132 | 379 | IPR001932 | - | |
Cam01g2578 | 380 | Coils | Coil | 95 | 115 | - | - | |
Cam01g2578 | 380 | Pfam | Protein phosphatase 2C | 143 | 371 | IPR001932 | - | |
Cam01g2578 | 380 | MobiDBLite | consensus disorder prediction | 91 | 123 | - | - | |
Cam01g2578 | 380 | SMART | PP2C_4 | 128 | 377 | IPR001932 | - | |
Cam01g2578 | 380 | PANTHER | PROTEIN PHOSPHATASE | 109 | 377 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Cam01g2578 | 380 | SUPERFAMILY | PP2C-like | 131 | 380 | IPR036457 | - | |
Cam01g2578 | 380 | Gene3D | - | 98 | 380 | IPR036457 | - | |
Cam01g2578 | 380 | CDD | PP2Cc | 131 | 379 | IPR001932 | - | |
Cam01g2578 | 380 | Gene3D | Jelly Rolls | 2 | 82 | IPR014710 | - | |
Cam01g2578 | 380 | MobiDBLite | consensus disorder prediction | 92 | 111 | - | - | |
Cam01g2578 | 380 | FunFam | Probable protein phosphatase 2C 39 | 122 | 380 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g2578 | Cam-Chr1:37414230 | Cam07g0248 | Cam-Chr7:3602918 | 4.30E-85 | dispersed | |
Cam01g2578 | Cam-Chr1:37414230 | Cam01g2581 | Cam-Chr1:37430613 | 4.70E-15 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g2578 | K14803 | - | csv:101211141 | 477.248 |