Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2600 ATGGAACGCGGTTTCAAAACGGGAAAGGAAAAGAAGTTTCCGAAAGTGGACTTAAGCCAGCAGACAACCAACTTTGATGTCAACGTCTCTGTGAGTTGCACCAAAAGATCAACTACTGCCAACCAATACACCGACGAAAACTACTTCCCGAACAGACACCCGGCTTCAGCTTCCGATCGTGAACACTGCTCTTTTGTTCGTCTTCTTCACCCAGCAAGGAGTTGGTTTCAGAAGTTCCAAAATAGAGTAAAGAAGGAAACTGTAAGTGACAATGAGGTTCAAGATGTACCCTCAAGTGCGACGAAGCAGAAAGTTGAGGTTGCTAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCTGATGTTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACAGAATACATGCGCCTTCGTAGACATAAAATGGGCGTTGATGACTTTGAACTTTTGACAATTATTGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTTAAAGCTGAAAGAAATCTTTTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGTTCCTTTCAGGATGATGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTGTTAATGCGCAAGGATATTTTGACGGAGGATGAGGCCAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATCCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACTGAGGAAGAAAAAGTAGTGGGGAAGAATGTCAGATCTTCCACCGAAAATGATAGTCAAATTAGTGCATCGAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGAACATTGGCTTATTCAGCTGTTGGAACGCCAGACTATATTGCCCCAGAAGTTTTATTGAGGAAAGGATATGGAATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTCCCACCTTTCTATTCTGATGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACTCATTTGAGATTCCCAACAGAAGCAAAACTGTCCATCGAGGCCAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATTCCAGAGATTCAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGCCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTGAACTTTGTTGGTTATACGTACAAGAATTTCGAAATTGTCAACGAACACCACTTGTCAGGCATTACTGAGATGAGGAAAAAGCCTATCAAGACCAAGAGACCATCTGTTACGACTCTATTTGGTACATTCACCGTTCTAAAATTTCTGACTAATGCAAGTTGCTGGTTTCCATTACATATTCTTACCTTCTGGCCTCTCTGTTTGGCTCTCTCTTTCCTTTCCTTAGCCACAGCAGATTCTTCGGAGCAGACTGTTCAAAGAAGTTATCCTAATCATTTGCCAACCCATCCCGAAGTCTCAGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAGCCGAAACGGGGTCACAGCAGCAGCAGTTTGGGCGGCCAATTCATGAAGCTGGCTAGTGGTTACGCAGCACAGACTTTTTGGGACACCAGAATAGGGTTGTGTGCAGACACAGGTCGACAGAAATTTGGGGTTATATACGAAGCGTCACCGGAAACTAGAGAAGGAAAAGGAAAATTTTACGAATTTTGA 2130 42.25 MERGFKTGKEKKFPKVDLSQQTTNFDVNVSVSCTKRSTTANQYTDENYFPNRHPASASDREHCSFVRLLHPARSWFQKFQNRVKKETVSDNEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVVGKNVRSSTENDSQISASKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFGTFTVLKFLTNASCWFPLHILTFWPLCLALSFLSLATADSSEQTVQRSYPNHLPTHPEVSESPDPSPRSTGSLQQPKRGHSSSSLGGQFMKLASGYAAQTFWDTRIGLCADTGRQKFGVIYEASPETREGKGKFYEF 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 37526205 37536115 - CaPI482276_01g026000.1 Cam01g2600 119682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2600 709 ProSiteProfiles AGC-kinase C-terminal domain profile. 477 549 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2600 709 ProSiteProfiles Protein kinase domain profile. 174 476 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2600 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2600 709 Pfam Protein kinase domain 175 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2600 709 Pfam Protein kinase domain 373 476 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2600 709 ProSitePatterns Protein kinases ATP-binding region signature. 180 203 IPR017441 GO:0005524(InterPro)
Cam01g2600 709 Pfam Protein kinase C terminal domain 495 539 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2600 709 CDD STKc_NDR_like 172 540 - -
Cam01g2600 709 Gene3D Transferase(Phosphotransferase) domain 1 258 325 - -
Cam01g2600 709 Gene3D Transferase(Phosphotransferase) domain 1 371 494 - -
Cam01g2600 709 MobiDBLite consensus disorder prediction 634 656 - -
Cam01g2600 709 CDD MobB_NDR_LATS-like 108 169 - -
Cam01g2600 709 FunFam Non-specific serine/threonine protein kinase 145 257 - -
Cam01g2600 709 FunFam Non-specific serine/threonine protein kinase 375 494 - -
Cam01g2600 709 FunFam Non-specific serine/threonine protein kinase 258 325 - -
Cam01g2600 709 Gene3D Phosphorylase Kinase; domain 1 495 505 - -
Cam01g2600 709 Gene3D Phosphorylase Kinase; domain 1 172 257 - -
Cam01g2600 709 MobiDBLite consensus disorder prediction 617 656 - -
Cam01g2600 709 SUPERFAMILY Protein kinase-like (PK-like) 155 523 IPR011009 -
Cam01g2600 709 PANTHER SERINE/THREONINE-PROTEIN KINASE 74 544 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cam01g2600 709 SMART pkinase_C_6 477 541 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2600 709 SMART serkin_6 174 476 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2600 Cam-Chr1:37526205 Cam06g0720 Cam-Chr6:9751194 5.40E-222 dispersed
Cam01g2600 Cam-Chr1:37526205 Cam05g1974 Cam-Chr5:28605096 1.60E-181 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84932 PF00069 Pkinase 4.40E-64 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2600 K08790 - csv:101208438 1045.03