Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2657 ATGGTTGCAGCAGCTTCAGCTTGGCACATGAAGTTCTTCACACTTACACTTGTGCTGCTCCTCCTTCCTTGTGTATGTGTATGTGTGCACTCCCACTCACTGTCCCTCAAGGCACAAGCTTCTGTTCTGCTTTCCATCAAACACAGTTTCGATGAAGCCACTCCAATTTCGACTCTCCTGGACTGGAATGCTTCAAATTACTCAGACCTCTGCAGTTGGACTGGAATTCAATGCGATGCCATTGGCATGAAGAGATCAGTGGTGTCGCTCGACATTTCCAATTCCAACATATCCGGGACCTTCCCCCCTCTAATTCACAAGCTAACCAAGCTTCGCTTTCTCAACATTTCCAACAATCAGTTCAGGGGGCAACTCCAGTGGGAGTATTCTCAGTTGAAACTGCTGCAGGTATTTGATGCTTATAACAACAATTTCAATGGCTCCCTCCCCACAGGCGTCCTTCAACTTCCCAGTCTAAAGCACTTAAATCTTGGCGGGAATTACTTCACCGGTCGAATCCCTCCAAGCTATGGTGATATGGGGGAGCTCATTTATCTGTCCCTTGCCGGCAATGACTTGGGCGGTCCCATTCCCCCTGAGCTTGGTAATCTTACCAATCTCCACCGCCTTTATTTGGGATACTTCAACCAGTTTGAGGGTGGGATACCGTCTCAACTCGAACAACTAGTGAATTTGAATCATCTCGACCTTGCGAGTTGTGGTTTACAAGGTCCAATCCCACCCGGGTTGGGGAATCTCAACAAGTTGGACACTCTGTTCTTGCAGACAAATCAGCTGAGCGGTTCAATTCCAACCCAGTTGGGCAACTTGAGCGCCTTGATTTCCCTTGACCTCTCCAACAACCAGTTAACGGGAGAGATCCCCCTTGAATTTGCAAACCTCCGCCAGCTTTCGCTGCTCAATTTATTCATGAACAAGTTGCATGGGGAGATTCCTAATGTTGTAGCCCATCTTCCGGGGTTGGAGGTTTTGAAGCTGTGGCAAAACAACTTCACAGGAGGCATTCCGTCAAAGCTGGGTGAGAATGGGAGGCTGAGGGAGGTGGACTTGTCCAGCAACAAGCTCACTGGGATGGTCCCGGAGCGTTTGTGCTTAGGAGGAAGGCTGAAGATCTTGATTTTACTCAACAATTTTTTGTTTGGGGGTGTGCCAGGTGATCTAGGGCGATGCCAGACGCTTGTAAGAGTTCGGATGGGTCAGAATTATTTGACGGGAACAATCCCAGATGGGCTGCTTTACTTGCCACAACTCTCCCTCATGGAATTGCAGAACAACTACCTGAGCGGACCCCTTCCACAACCACAACACATCCGCCAACTCCCCTCCAAACTAGGCCGCCTAAACCTTTCCAACAATCGCTTTTCTGGATCCCTCCCCATCTCCATCAGCAACTTCACAAACCTCCAGATTCTGCTTTTGAGTGGAAACCGTTTCTCTGGCCACATTCCTCCCCAAATTGGTAAACTGCGAAATCTTCTCAAGCTAGACATGAGCAGAAACAACTTTTCCGGTTCAATCCCTCCTGAGTTCAGCAATTGTGTCTCCCTCACTTACCTGGATTTGAGCCTCAATCACCTAACTTCTTCAATCCCAGTTCAAATCTCACAAATTCGCATCTTAAATTATCTTAACTTGTCTTGGAACCATCTCACCCACACCCTTCCCATCGAAATTGGCTCCATAAAAAGCTTGACCTCTGCCGACTTCTCCCACAACAACTTTTCCGGTCCCATACCCCAAACTGGCCAGTTTCTACTCTTCAATTCCACATCCTTTGTGGGCAACCCTCAATTGTGTGGATTCTCCTTGAATCCCTGCAAGTCTCAAACCCCAACCACCGCCAATTCGAACAAAGGTGTTGGGAAATATAAGCTGGTGTTCGCGTTGGGACTATTGATGTGTTCAGTAATATTTGCAGCTCTGGCAATTGTTCAGACAAGGAAAGCGAAAAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGTAAGGATATCACAGAGTGCATAAAAGAGAACAACATAATTGGAAAAGGAGGAGCTGGTATTGTGTACAAAGGAATCATGCCAAACGGGGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAACCAAGGGCTCCTCCCACGACAACGGCCTGTCCGCCGAGATACGAACGCTGGGCAAAATCCGGCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCCAATAAGCAGACGAATCTGCTGGTATACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCACGGGAAGAGGGGGGGTTCTCTAAAATGGGGAACCAGGCTGAAGATAGCCATAGAAGCCGCCAAAGGGCTTTGCTATTTGCACCATGACTGCTCCCCGCTCATAATTCATAGGGACGTCAAGTCCAACAACATTTTGCTCAACTCAGACTTCGAGGCTCATGTAGCGGACTTCGGTTTGGCCAAGTTCTTGCAAGACAATGGAACATCGGAGTGCATGTCTGCAATAGCCGGCTCTTATGGGTACATTGCTCCAGAATATGCATACACATTAAAAGTGGACGAAAAAACTGATGTTTACAGTTTTGGAGTGGTGCTGCTGGAGTTGATAACGGGGCGGAAGCCAGTTGGAAATTTTGGAGAAGATGGTTTGGACATTGTCCAGTGGGCTAGGATTCAAACCAACTCCACCAAAGAAGGTGTTGTTAAGCGTGGAGCGGCCAACAATGAAAGAAGTGGTTCAAATGCTTGCACAAGCCCATCAACCAAATACTTTCCACATGCATTGAACATACCCTATTATCAACCCATAGCCAATGTTTGGATTGAAGTTTTAATTCCATTCTACATGAGGTGCCAACTGACTCGTGGTTCATCGGTGAGGCAACAAATGATAGAGCATCCATAA 2934 47.27 MVAAASAWHMKFFTLTLVLLLLPCVCVCVHSHSLSLKAQASVLLSIKHSFDEATPISTLLDWNASNYSDLCSWTGIQCDAIGMKRSVVSLDISNSNISGTFPPLIHKLTKLRFLNISNNQFRGQLQWEYSQLKLLQVFDAYNNNFNGSLPTGVLQLPSLKHLNLGGNYFTGRIPPSYGDMGELIYLSLAGNDLGGPIPPELGNLTNLHRLYLGYFNQFEGGIPSQLEQLVNLNHLDLASCGLQGPIPPGLGNLNKLDTLFLQTNQLSGSIPTQLGNLSALISLDLSNNQLTGEIPLEFANLRQLSLLNLFMNKLHGEIPNVVAHLPGLEVLKLWQNNFTGGIPSKLGENGRLREVDLSSNKLTGMVPERLCLGGRLKILILLNNFLFGGVPGDLGRCQTLVRVRMGQNYLTGTIPDGLLYLPQLSLMELQNNYLSGPLPQPQHIRQLPSKLGRLNLSNNRFSGSLPISISNFTNLQILLLSGNRFSGHIPPQIGKLRNLLKLDMSRNNFSGSIPPEFSNCVSLTYLDLSLNHLTSSIPVQISQIRILNYLNLSWNHLTHTLPIEIGSIKSLTSADFSHNNFSGPIPQTGQFLLFNSTSFVGNPQLCGFSLNPCKSQTPTTANSNKGVGKYKLVFALGLLMCSVIFAALAIVQTRKAKKKSSSWKLAAFQKLEFGSKDITECIKENNIIGKGGAGIVYKGIMPNGEQVAIKKLLAITKGSSHDNGLSAEIRTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGGSLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLQDNGTSECMSAIAGSYGYIAPEYAYTLKVDEKTDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWARIQTNSTKEGVVKRGAANNERSGSNACTSPSTKYFPHALNIPYYQPIANVWIEVLIPFYMRCQLTRGSSVRQQMIEHP 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38050283 38054204 - CaPI482276_01g026570.1 Cam01g2657 119739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2657 977 Pfam Leucine Rich Repeat 158 178 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 547 567 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 351 371 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 87 108 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 498 520 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 522 542 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 474 496 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 Pfam Leucine Rich Repeat 280 301 IPR001611 GO:0005515(InterPro)
Cam01g2657 977 ProSiteProfiles Protein kinase domain profile. 682 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2657 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 903 IPR050647 -
Cam01g2657 977 FunFam Leucine-rich repeat receptor-like protein kinase 36 199 - -
Cam01g2657 977 Pfam Protein kinase domain 684 888 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2657 977 Gene3D Ribonuclease Inhibitor 323 621 IPR032675 -
Cam01g2657 977 SUPERFAMILY Protein kinase-like (PK-like) 676 890 IPR011009 -
Cam01g2657 977 SMART LRR_typ_2 229 253 IPR003591 -
Cam01g2657 977 SMART LRR_typ_2 472 495 IPR003591 -
Cam01g2657 977 SMART LRR_typ_2 325 349 IPR003591 -
Cam01g2657 977 SMART LRR_typ_2 496 519 IPR003591 -
Cam01g2657 977 SMART LRR_typ_2 180 204 IPR003591 -
Cam01g2657 977 SMART LRR_typ_2 520 544 IPR003591 -
Cam01g2657 977 SMART LRR_typ_2 277 300 IPR003591 -
Cam01g2657 977 SMART LRR_typ_2 156 179 IPR003591 -
Cam01g2657 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g2657 977 Gene3D Phosphorylase Kinase; domain 1 646 759 - -
Cam01g2657 977 SUPERFAMILY L domain-like 294 626 - -
Cam01g2657 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 217 322 - -
Cam01g2657 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 651 759 - -
Cam01g2657 977 SMART serkin_6 682 934 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g2657 977 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 760 924 - -
Cam01g2657 977 Gene3D Transferase(Phosphotransferase) domain 1 760 931 - -
Cam01g2657 977 Gene3D Ribonuclease Inhibitor 37 322 IPR032675 -
Cam01g2657 977 SUPERFAMILY L domain-like 71 367 - -
Cam01g2657 977 Pfam Leucine rich repeat N-terminal domain 38 79 IPR013210 -
Cam01g2657 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 329 617 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2657 Cam-Chr1:38050283 Cam10g0790 Cam-Chr10:15046422 4.20E-132 dispersed
Cam01g2657 Cam-Chr1:38050283 Cam01g1846 Cam-Chr1:31977690 5.80E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84933 PF00069 Pkinase 2.40E-44 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2657 - - - 0.0