Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2660 ATGAGATGGACAAGCTCGAATCAGTTGGGTTCATCAAGGAAGTGCATTATCCGGATTCCTCACAAACTTGGTATGGAGATCGGGAAACATAATGATGATGGAGATGATAAAACAAAAAACAGAAAATCCAATATTTGCCAGGAATGTGGCGCTGAGTTCAGGAAGCCTGCTTACTTGAAGCAACATATGCAAAGTCATTCGCTCGAGAGGCCATTTATCTGTTCCGTAGATGGTTGTGAAGCCAGTTATAGAAGAAAGGATCATTTGACCCGCCACCTTCTCCAGCATCAAGGAATTATATTCAAATGTCCAATTGAGAGCTGTAACCGTGAATTTGCATATATATCATGTGTAAATAGACACTTGAAAGAATGCCATGGAGGTGAAGCTCCTCCTGAAGAATGTCAGAAGCAGTTTGTTTGCCCCGAAGGTGGATGTGGAAAAGTTTTCAGATATGCCTCTCAATTGCAAAAGCATGAGGATTCCCATGTCAAGCTAGACTCAATAGAGGCATGTTGTACTGAACCGGGTTGCTTGAGAACATTTACCAACAAGCAATGCCTAAGGGCTCATATGCAGTCCTGCCACCAATACATCAAATGTGAGATTTGTGGGGAAAAAAAATTAAGAAAGAACTTGAAGCAACATCTACGACAAAAGCATGAAAGTGAAGGTCCACTGGAGGCAATTCCATGCAGGTATGAGGGCTGCAGCAAGATTTTTTCAACAGCTTCAAATCTCCAGCAACACATGAAGGTTGTGCATATGGGACAAAAGCCGTTTGCATGTTGTTTCCCTGGTTGTGGCATGAGATTTGGGTATAAGCATGTGAGAGACAACCATGAGAAAAGTGGCCAGCATGTTTACACTAATGGGGATTTTGAAGCAGCTGATGAACAATTCCGCTCAAAACCAAGGGGAGGGAGAAAAAGAATCTGTCCAACTGTTGAAATGCTCATAAGGAAGAGGGTTACCCCCCCAAGTGAGTTTGATTTCACGATGGATGAAGAATGTTAG 1017 42.58 MRWTSSNQLGSSRKCIIRIPHKLGMEIGKHNDDGDDKTKNRKSNICQECGAEFRKPAYLKQHMQSHSLERPFICSVDGCEASYRRKDHLTRHLLQHQGIIFKCPIESCNREFAYISCVNRHLKECHGGEAPPEECQKQFVCPEGGCGKVFRYASQLQKHEDSHVKLDSIEACCTEPGCLRTFTNKQCLRAHMQSCHQYIKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCRYEGCSKIFSTASNLQQHMKVVHMGQKPFACCFPGCGMRFGYKHVRDNHEKSGQHVYTNGDFEAADEQFRSKPRGGRKRICPTVEMLIRKRVTPPSEFDFTMDEEC 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38108513 38112631 - CaPI482276_01g026600.1 Cam01g2660 119742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2660 338 Gene3D Classic Zinc Finger 100 163 - -
Cam01g2660 338 Gene3D Classic Zinc Finger 72 98 - -
Cam01g2660 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 260 IPR013087 -
Cam01g2660 338 Gene3D Classic Zinc Finger 227 302 - -
Cam01g2660 338 Pfam Zinc finger, C2H2 type 232 255 IPR013087 -
Cam01g2660 338 Pfam Zinc finger, C2H2 type 46 66 IPR013087 -
Cam01g2660 338 Pfam Zinc finger, C2H2 type 139 163 IPR013087 -
Cam01g2660 338 Pfam Zinc finger, C2H2 type 72 96 IPR013087 -
Cam01g2660 338 SUPERFAMILY beta-beta-alpha zinc fingers 136 164 IPR036236 -
Cam01g2660 338 SUPERFAMILY beta-beta-alpha zinc fingers 211 267 IPR036236 -
Cam01g2660 338 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Cam01g2660 338 ProSitePatterns Zinc finger C2H2 type domain signature. 103 126 IPR013087 -
Cam01g2660 338 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Cam01g2660 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Cam01g2660 338 ProSitePatterns Zinc finger C2H2 type domain signature. 263 287 IPR013087 -
Cam01g2660 338 Gene3D Classic Zinc Finger 11 71 - -
Cam01g2660 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 131 IPR013087 -
Cam01g2660 338 SMART c2h2final6 199 221 IPR013087 -
Cam01g2660 338 SMART c2h2final6 44 66 IPR013087 -
Cam01g2660 338 SMART c2h2final6 72 96 IPR013087 -
Cam01g2660 338 SMART c2h2final6 171 196 IPR013087 -
Cam01g2660 338 SMART c2h2final6 230 255 IPR013087 -
Cam01g2660 338 SMART c2h2final6 101 126 IPR013087 -
Cam01g2660 338 SMART c2h2final6 261 287 IPR013087 -
Cam01g2660 338 SMART c2h2final6 139 163 IPR013087 -
Cam01g2660 338 SUPERFAMILY beta-beta-alpha zinc fingers 82 137 IPR036236 -
Cam01g2660 338 SUPERFAMILY beta-beta-alpha zinc fingers 58 98 IPR036236 -
Cam01g2660 338 PANTHER ZINC FINGER PROTEIN 36 332 IPR051061 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0006357(PANTHER)|GO:0080084(PANTHER)
Cam01g2660 338 ProSitePatterns Zinc finger C2H2 type domain signature. 74 96 IPR013087 -
Cam01g2660 338 ProSitePatterns Zinc finger C2H2 type domain signature. 141 163 IPR013087 -
Cam01g2660 338 ProSitePatterns Zinc finger C2H2 type domain signature. 173 196 IPR013087 -
Cam01g2660 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 98 IPR013087 -
Cam01g2660 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 168 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2660 Cam-Chr1:38108513 Cam05g2885 Cam-Chr5:35884952 2.30E-178 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51399 PF00096 zf-C2H2 0.00016 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2660 K09191 - csv:101217595 616.69